RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 CEACAM4O75871 244 aa14.28□□□□□ -0.12
COL9A1-201ENST00000320755 CD40P25942 277 aa14.28□□□□□ -0.12
COL9A1-201ENST00000320755 DEFA6Q01524 100 aa14.28□□□□□ -0.12
COL9A1-201ENST00000320755 OCC1Q8TAD7 63 aa14.28□□□□□ -0.12
COL9A1-201ENST00000320755 RAB1CQ92928 201 aa14.28□□□□□ -0.12
COL9A1-201ENST00000320755 GCHFRP30047 84 aa14.27□□□□□ -0.12
COL9A1-201ENST00000320755 TMEM14BQ9NUH8 114 aa14.27□□□□□ -0.12
COL9A1-201ENST00000320755 ZNF318Q5VUA4 2279 aa14.27□□□□□ -0.13
COL9A1-201ENST00000320755 MDFIC2A0A1B0GVS7 189 aa14.27□□□□□ -0.13
COL9A1-201ENST00000320755 GGCTO75223 188 aaKnown RBP14.27□□□□□ -0.13
COL9A1-201ENST00000320755 RPL31P62899 125 aaKnown RBP14.27□□□□□ -0.13
COL9A1-201ENST00000320755 RAB31Q13636 194 aa14.27□□□□□ -0.13
COL9A1-201ENST00000320755 STUMQ69YW2 141 aa14.27□□□□□ -0.13
COL9A1-201ENST00000320755 SFRP2Q96HF1 295 aa14.27□□□□□ -0.13
COL9A1-201ENST00000320755 SLC35D1Q9NTN3 355 aa14.27□□□□□ -0.13
COL9A1-201ENST00000320755 LSM4Q9Y4Z0 139 aaKnown RBP14.27□□□□□ -0.13
COL9A1-201ENST00000320755 TNFSF4P23510 183 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 SRP14P37108 136 aaKnown RBP14.26□□□□□ -0.13
COL9A1-201ENST00000320755 MIR17HGQ75NE6 70 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 OR10W1Q8NGF6 305 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 PLEKHA3Q9HB20 300 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 TRAPPC1Q9Y5R8 145 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 NAV3Q8IVL0 2385 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 CT45A6P0DMU7 189 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 CT45A5P0DMU8 189 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 CT45A7P0DMV0 189 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 TMPRSS3P57727 454 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 RHOBP62745 196 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 RBMXL3Q8N7X1 1067 aaKnown RBP14.26□□□□□ -0.13
COL9A1-201ENST00000320755 IL19Q9UHD0 177 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 TANC2Q9HCD6 1990 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 RAI1Q7Z5J4 1906 aaPredicted RBP14.26□□□□□ -0.13
COL9A1-201ENST00000320755 CUL9Q8IWT3 2517 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 SLC17A3O00476 420 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 CCL3L1P16619 93 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 UNQ6494/PRO21346Q6UXR6 183 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 Q6ZS92 163 aa14.26□□□□□ -0.13
COL9A1-201ENST00000320755 A8MXE2 369 aa14.25□□□□□ -0.13
COL9A1-201ENST00000320755 TM4SF5O14894 197 aa14.25□□□□□ -0.13
COL9A1-201ENST00000320755 FOXA2Q9Y261 457 aaPredicted RBP14.25□□□□□ -0.13
COL9A1-201ENST00000320755 ACTL10Q5JWF8 245 aa14.25□□□□□ -0.13
COL9A1-201ENST00000320755 MUC6Q6W4X9 2439 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 TRGV8A0A0C4DH27 118 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 PSG5Q15238 335 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 ZNF788Q6ZQV5 615 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 CISD2Q8N5K1 135 aaKnown RBP14.24□□□□□ -0.13
COL9A1-201ENST00000320755 TLN1Q9Y490 2541 aaKnown RBP14.24□□□□□ -0.13
COL9A1-201ENST00000320755 IGHV3-48P01763 117 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 GATA4P43694 442 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 HLA-DRB5Q30154 266 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 ZNF439Q8NDP4 499 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 FAM222BQ8WU58 562 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 H1FXQ92522 213 aaKnown RBP14.24□□□□□ -0.13
COL9A1-201ENST00000320755 RAB9BQ9NP90 201 aa14.24□□□□□ -0.13
COL9A1-201ENST00000320755 OR10J4P0C629 311 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 GZMBP10144 247 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 RTL8BQ17RB0 113 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 MRPL41Q8IXM3 137 aaKnown RBP14.23□□□□□ -0.13
COL9A1-201ENST00000320755 CCL17Q92583 94 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 TACC2O95359 2948 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 TIMP3P35625 211 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 OR5I1Q13606 314 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 RPUSD1Q9UJJ7 312 aaKnown RBP14.23□□□□□ -0.13
COL9A1-201ENST00000320755 OR7C2O60412 319 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 NDUFS6O75380 124 aaKnown RBP14.23□□□□□ -0.13
COL9A1-201ENST00000320755 CNN1P51911 297 aaKnown RBP14.23□□□□□ -0.13
COL9A1-201ENST00000320755 OR10G8Q8NGN5 311 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 ADTRPQ96IZ2 230 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 PRNDQ9UKY0 176 aa14.23□□□□□ -0.13
COL9A1-201ENST00000320755 ABCA4P78363 2273 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 SNRPCP09234 159 aaKnown RBP14.22□□□□□ -0.13
COL9A1-201ENST00000320755 OR4A8P0C604 315 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 SAA1P0DJI8 122 aaPredicted RBP14.22□□□□□ -0.13
COL9A1-201ENST00000320755 OR10J1P30954 320 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 CCKARP32238 428 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 ZNF90Q03938 601 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 IGFL3Q6UXB1 125 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.22□□□□□ -0.13
COL9A1-201ENST00000320755 OR9G1Q8NH87 305 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 IMMP2LQ96T52 175 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 SFXN3Q9BWM7 321 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 MRPL20Q9BYC9 149 aaKnown RBP14.22□□□□□ -0.13
COL9A1-201ENST00000320755 SLC25A10Q9UBX3 287 aaPredicted RBP14.22□□□□□ -0.13
COL9A1-201ENST00000320755 IGKV1OR2-108A0A075B7D4 117 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 TEX50A0A1B0GTY4 177 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 hADV38S2A0JD32 116 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 UPK2O00526 184 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 SPINK4O60575 86 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 CHRNB4P30926 498 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 GPX4P36969 197 aaPredicted RBP14.22□□□□□ -0.13
COL9A1-201ENST00000320755 TMEM256Q8N2U0 113 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 NABP2Q9BQ15 211 aa14.22□□□□□ -0.13
COL9A1-201ENST00000320755 GRIFINA4D1Z8 144 aa14.21□□□□□ -0.13
COL9A1-201ENST00000320755 TSTD3H0UI37 97 aa14.21□□□□□ -0.13
COL9A1-201ENST00000320755 RPL29P47914 159 aaKnown RBP14.21□□□□□ -0.13
COL9A1-201ENST00000320755 TMEM249Q2WGJ8 235 aa14.21□□□□□ -0.13
COL9A1-201ENST00000320755 ACY3Q96HD9 319 aa14.21□□□□□ -0.13
COL9A1-201ENST00000320755 K7EN84 100 aa14.21□□□□□ -0.13
COL9A1-201ENST00000320755 CRYABP02511 175 aaKnown RBP14.21□□□□□ -0.13
COL9A1-201ENST00000320755 LINC00869P0C866 280 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms