RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 CMTM2Q8TAZ6 248 aa17.03■□□□□ 0.32
CLK3-202ENST00000395066 HTD2P86397 168 aa17.03■□□□□ 0.32
CLK3-202ENST00000395066 MAP1BP46821 2468 aaKnown RBP17.03■□□□□ 0.32
CLK3-202ENST00000395066 CACNA1HO95180 2353 aa17.03■□□□□ 0.32
CLK3-202ENST00000395066 HPRT1P00492 218 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 ADH4P08319 380 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 RPL29P47914 159 aaKnown RBP17.02■□□□□ 0.32
CLK3-202ENST00000395066 YPEL3P61236 119 aaPredicted RBP17.02■□□□□ 0.32
CLK3-202ENST00000395066 SPATA31B1PQ5VZV4 182 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 GCSAMQ8N6F7 178 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 IFI27L2Q9H2X8 130 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 TMEM140Q9NV12 185 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 SCO2A0A1W2PP80 73 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 GRIFINA4D1Z8 144 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 M0R296 226 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 GFRA3O60609 400 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 ZNF83P51522 516 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 PDLIM3Q53GG5 364 aaPredicted RBP17.02■□□□□ 0.32
CLK3-202ENST00000395066 FAM90A1Q86YD7 464 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 TCTEX1D1Q8N7M0 179 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 C1orf159Q96HA4 380 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 GGTLC1Q9BX51 225 aa17.02■□□□□ 0.32
CLK3-202ENST00000395066 VDAC2P45880 294 aaPredicted RBP17.01■□□□□ 0.31
CLK3-202ENST00000395066 LOXL3P58215 753 aa17.01■□□□□ 0.31
CLK3-202ENST00000395066 RELBQ01201 579 aa17.01■□□□□ 0.31
CLK3-202ENST00000395066 MOGAT3Q86VF5 341 aa17.01■□□□□ 0.31
CLK3-202ENST00000395066 DSCAMO60469 2012 aa17.01■□□□□ 0.31
CLK3-202ENST00000395066 THBS3P49746 956 aa17.01■□□□□ 0.31
CLK3-202ENST00000395066 ZNF705AQ6ZN79 300 aaPredicted RBP17.01■□□□□ 0.31
CLK3-202ENST00000395066 TMEM106BQ9NUM4 274 aa17.01■□□□□ 0.31
CLK3-202ENST00000395066 ZNF891A8MT65 544 aaPredicted RBP17■□□□□ 0.31
CLK3-202ENST00000395066 ZNF25P17030 456 aaPredicted RBP17■□□□□ 0.31
CLK3-202ENST00000395066 FAM122AQ96E09 287 aa17■□□□□ 0.31
CLK3-202ENST00000395066 TNCP24821 2201 aa17■□□□□ 0.31
CLK3-202ENST00000395066 CEP250Q9BV73 2442 aa17■□□□□ 0.31
CLK3-202ENST00000395066 PRSS46E5RG02 174 aa17■□□□□ 0.31
CLK3-202ENST00000395066 TNFSF13O75888 250 aa17■□□□□ 0.31
CLK3-202ENST00000395066 TRIP6Q15654 476 aaKnown RBP17■□□□□ 0.31
CLK3-202ENST00000395066 OR2V2Q96R30 315 aa17■□□□□ 0.31
CLK3-202ENST00000395066 SEPSECSQ9HD40 501 aaKnown RBP17■□□□□ 0.31
CLK3-202ENST00000395066 PLCE1Q9P212 2302 aa17■□□□□ 0.31
CLK3-202ENST00000395066 A0A1B0GWJ7 208 aa17■□□□□ 0.31
CLK3-202ENST00000395066 SRRM5B3KS81 715 aa17■□□□□ 0.31
CLK3-202ENST00000395066 SPRY3O43610 288 aa17■□□□□ 0.31
CLK3-202ENST00000395066 IGLV1-44P01699 117 aa17■□□□□ 0.31
CLK3-202ENST00000395066 CD33P20138 364 aa17■□□□□ 0.31
CLK3-202ENST00000395066 BTF3P20290 206 aaKnown RBP17■□□□□ 0.31
CLK3-202ENST00000395066 TIMP3P35625 211 aa17■□□□□ 0.31
CLK3-202ENST00000395066 SELENOTP62341 195 aa17■□□□□ 0.31
CLK3-202ENST00000395066 TOMM20LQ6UXN7 152 aa17■□□□□ 0.31
CLK3-202ENST00000395066 OR10G8Q8NGN5 311 aa17■□□□□ 0.31
CLK3-202ENST00000395066 S1PR3Q99500 378 aa17■□□□□ 0.31
CLK3-202ENST00000395066 TXNDC17Q9BRA2 123 aa17■□□□□ 0.31
CLK3-202ENST00000395066 HINT2Q9BX68 163 aa17■□□□□ 0.31
CLK3-202ENST00000395066 TCF19Q9Y242 345 aa17■□□□□ 0.31
CLK3-202ENST00000395066 YTHDF2Q9Y5A9 579 aaKnown RBP17■□□□□ 0.31
CLK3-202ENST00000395066 FOXH1O75593 365 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 TPPP2P59282 170 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 ERVK-16P61578 105 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 MBNL2Q5VZF2 373 aaKnown RBP16.99■□□□□ 0.31
CLK3-202ENST00000395066 STARD4Q96DR4 205 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 DKK4Q9UBT3 224 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 TP53TG3Q9ULZ0 132 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 M0QZK8 103 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 YPEL1O60688 119 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 ARSJQ5FYB0 599 aaPredicted RBP16.99■□□□□ 0.31
CLK3-202ENST00000395066 Q6ZWC4 215 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 OCC1Q8TAD7 63 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 YPEL2Q96QA6 119 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 ZNF71Q9NQZ8 489 aaPredicted RBP16.99■□□□□ 0.31
CLK3-202ENST00000395066 JPT1Q9UK76 154 aa16.99■□□□□ 0.31
CLK3-202ENST00000395066 MPDU1O75352 247 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 OPRK1P41145 380 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 PAFAH1B2P68402 229 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 CHODLQ9H9P2 273 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 ZNRD1Q9P1U0 126 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 YLPM1P49750 1951 aaKnown RBP16.98■□□□□ 0.31
CLK3-202ENST00000395066 PRR33A8MZF0 331 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 STAG3L2P0CL84 134 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 STAG3L3P0CL85 134 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 CBLN1P23435 193 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 BHLHA15Q7RTS1 189 aaPredicted RBP16.98■□□□□ 0.31
CLK3-202ENST00000395066 RPRMLQ8N4K4 120 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 PARD6AQ9NPB6 346 aa16.98■□□□□ 0.31
CLK3-202ENST00000395066 M0R1B8 84 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 CXorf1O96002 111 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 ZNF90Q03938 601 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 CALYQ9NYX4 217 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 ARFGEF3Q5TH69 2177 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 MGST3O14880 152 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 LINC00310P59036 64 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 SEM1Q6ZVN7 128 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 MOB3BQ86TA1 216 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 C1orf162Q8NEQ5 155 aaPredicted RBP16.97■□□□□ 0.31
CLK3-202ENST00000395066 DEFB108BQ8NET1 73 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 PLSCR4Q9NRQ2 329 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 PROCRQ9UNN8 238 aa16.97■□□□□ 0.31
CLK3-202ENST00000395066 ROS1P08922 2347 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 SAA2-SAA4A0A096LPE2 208 aa16.96■□□□□ 0.31
CLK3-202ENST00000395066 IL6RP08887 468 aaPredicted RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms