RNA–Protein interactions for RNA: ENST00000567060.5

CLN6-208, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 945 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-208ENST00000567060 IGHV7-81A0A0B4J1V7 117 aa13.2□□□□□ -0.3
CLN6-208ENST00000567060 MARCH11A6NNE9 402 aa13.2□□□□□ -0.3
CLN6-208ENST00000567060 KBTBD11O94819 623 aa13.2□□□□□ -0.3
CLN6-208ENST00000567060 MDKP21741 143 aaPredicted RBP13.2□□□□□ -0.3
CLN6-208ENST00000567060 PROK1P58294 105 aa13.2□□□□□ -0.3
CLN6-208ENST00000567060 C9orf152Q5JTZ5 239 aa13.2□□□□□ -0.3
CLN6-208ENST00000567060 IL22RA2Q969J5 263 aa13.2□□□□□ -0.3
CLN6-208ENST00000567060 R3HDM4Q96D70 268 aa13.2□□□□□ -0.3
CLN6-208ENST00000567060 TMEM222Q9H0R3 208 aa13.2□□□□□ -0.3
CLN6-208ENST00000567060 LINC00854A0A1B0GVQ3 168 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 ACTL6BO94805 426 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 S1PR2O95136 353 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 CDS2O95674 445 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 IL6RP08887 468 aaPredicted RBP13.19□□□□□ -0.3
CLN6-208ENST00000567060 CCR6P51684 374 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 SLC35B1P78383 322 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 SRSF4Q08170 494 aaKnown RBP13.19□□□□□ -0.3
CLN6-208ENST00000567060 TMEM267Q0VDI3 215 aaPredicted RBP13.19□□□□□ -0.3
CLN6-208ENST00000567060 PRSS8Q16651 343 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 SLC25A42Q86VD7 318 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 FAM219AQ8IW50 185 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 COMMD1Q8N668 190 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 DMBX1Q8NFW5 382 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 TP53RKQ96S44 253 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 ALX4Q9H161 411 aaPredicted RBP13.19□□□□□ -0.3
CLN6-208ENST00000567060 TBC1D24Q9ULP9 559 aa13.19□□□□□ -0.3
CLN6-208ENST00000567060 FAM240BA0A1B0GVZ2 78 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 CA2P00918 260 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 OR5AC1P0C628 307 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 CX3CL1P78423 397 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 THOC7Q6I9Y2 204 aaKnown RBP13.18□□□□□ -0.3
CLN6-208ENST00000567060 OR4A47Q6IF82 309 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 Q6ZS46 218 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 GLYATL2Q8WU03 294 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 TMEM230Q96A57 120 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 TMEM56Q96MV1 263 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 TMEM56-RWDD3S4R434 201 aa13.18□□□□□ -0.3
CLN6-208ENST00000567060 DUXBA0A1W2PPF3 345 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 TCRBP04435 133 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 AKR1C4P17516 323 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 RPL8P62917 257 aaKnown RBP13.17□□□□□ -0.3
CLN6-208ENST00000567060 TRIM16LQ309B1 348 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 TMED4Q7Z7H5 227 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 STPG2Q8N412 459 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 ADAD2Q8NCV1 583 aaKnown RBP13.17□□□□□ -0.3
CLN6-208ENST00000567060 ARPC1AQ92747 370 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 RBPMSQ93062 196 aaKnown RBP13.17□□□□□ -0.3
CLN6-208ENST00000567060 SEC22AQ96IW7 307 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 HSPB9Q9BQS6 159 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 TMEM140Q9NV12 185 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 FKBP11Q9NYL4 201 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 CACFD1Q9UGQ2 172 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 TNCP24821 2201 aa13.17□□□□□ -0.3
CLN6-208ENST00000567060 UPK2O00526 184 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 SNAPC5O75971 98 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 CNIH1O95406 144 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 KRASP01116 189 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 VDAC1P21796 283 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 MECP2P51608 486 aaKnown RBP13.16□□□□□ -0.3
CLN6-208ENST00000567060 IFITM3Q01628 133 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 FXYD3Q14802 87 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 AKIRIN2Q53H80 203 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 H2BFWTQ7Z2G1 175 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 DUSP18Q8NEJ0 188 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 ENKURQ8TC29 256 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 WIPF2Q8TF74 440 aaPredicted RBP13.16□□□□□ -0.3
CLN6-208ENST00000567060 WFDC12Q8WWY7 111 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 SPIN2AQ99865 258 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 SPIN2BQ9BPZ2 258 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 SRSF8Q9BRL6 282 aaKnown RBP13.16□□□□□ -0.3
CLN6-208ENST00000567060 C20orf85Q9H1P6 137 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 ZNF430Q9H8G1 570 aaPredicted RBP13.16□□□□□ -0.3
CLN6-208ENST00000567060 PRNDQ9UKY0 176 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 NUBP2Q9Y5Y2 271 aa13.16□□□□□ -0.3
CLN6-208ENST00000567060 SH2D7A6NKC9 451 aaPredicted RBP13.15□□□□□ -0.3
CLN6-208ENST00000567060 FCN1O00602 326 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 ATP6V0E1O15342 81 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 SFT2D2O95562 160 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 AKR1C2P52895 323 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 SUPT4H1P63272 117 aaKnown RBP13.15□□□□□ -0.3
CLN6-208ENST00000567060 TMEM187Q14656 261 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 SSX9Q7RTT3 188 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 CENPVQ7Z7K6 275 aaPredicted RBP13.15□□□□□ -0.3
CLN6-208ENST00000567060 ZNF695Q8IW36 515 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 VKORC1L1Q8N0U8 176 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 LGI3Q8N145 548 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 KLHDC1Q8N7A1 406 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 LRTM2Q8N967 370 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 LSM10Q969L4 123 aaKnown RBP13.15□□□□□ -0.3
CLN6-208ENST00000567060 RBMXL1Q96E39 390 aaKnown RBP13.15□□□□□ -0.3
CLN6-208ENST00000567060 RRNAD1Q96FB5 475 aaKnown RBP13.15□□□□□ -0.3
CLN6-208ENST00000567060 PARP11Q9NR21 331 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 TPSG1Q9NRR2 321 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 KMT2CQ8NEZ4 4911 aaKnown RBP13.15□□□□□ -0.3
CLN6-208ENST00000567060 PLXNB1O43157 2135 aa13.15□□□□□ -0.3
CLN6-208ENST00000567060 A0A0B4J2A0 478 aa13.14□□□□□ -0.31
CLN6-208ENST00000567060 PSMB11A5LHX3 300 aa13.14□□□□□ -0.31
CLN6-208ENST00000567060 IGKV1-39P01597 117 aa13.14□□□□□ -0.31
CLN6-208ENST00000567060 IGKV1D-39P04432 117 aa13.14□□□□□ -0.31
CLN6-208ENST00000567060 HLA-GP17693 338 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms