RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CELSR2Q9HCU4 2923 aa16.93■□□□□ 0.3
VPS28-208ENST00000527797 KANTRA0A1W2PQU2 76 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 C15orf61A6NNL5 157 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 IFNA17P01571 189 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 IGLV2-23P01705 113 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 SAA4P35542 130 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 CAV2P51636 162 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 HABP2Q14520 560 aaPredicted RBP16.92■□□□□ 0.3
VPS28-208ENST00000527797 DYNAPQ8N1N2 210 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 C17orf50Q8WW18 174 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 CFHR4Q92496 578 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 LYRM2Q9NU23 88 aaPredicted RBP16.92■□□□□ 0.3
VPS28-208ENST00000527797 FOXA2Q9Y261 457 aaPredicted RBP16.92■□□□□ 0.3
VPS28-208ENST00000527797 IGHV1-69DA0A0B4J2H0 117 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 FAM24AA6NFZ4 105 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 CEBPZOSA8MTT3 80 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 KBTBD11O94819 623 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 TMEM50AO95807 157 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 TGFAP01135 160 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 IGHV1-69P01742 117 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 IAPPP10997 89 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 PAX9P55771 341 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 SPCS3P61009 180 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 RITA1Q96K30 269 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 SMIM8Q96KF7 97 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 TSNAXQ99598 290 aaKnown RBP16.92■□□□□ 0.3
VPS28-208ENST00000527797 SLA2Q9H6Q3 261 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 TMEM14BQ9NUH8 114 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 WSB1Q9Y6I7 421 aa16.92■□□□□ 0.3
VPS28-208ENST00000527797 ANKRD17O75179 2603 aaKnown RBP16.91■□□□□ 0.3
VPS28-208ENST00000527797 J3QLI3 93 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 BCL2L11O43521 198 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 VENTXO95231 258 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 IGHV4-31P0DP07 118 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 TAS2R30P59541 319 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 TMEM249Q2WGJ8 235 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 TMEM167AQ8TBQ9 72 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 FOXC2Q99958 501 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 ARPC5LQ9BPX5 153 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 SLC25A31Q9H0C2 315 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 FKBP11Q9NYL4 201 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 PSENENQ9NZ42 101 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 NUP50Q9UKX7 468 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 MED13LQ71F56 2210 aa16.91■□□□□ 0.3
VPS28-208ENST00000527797 TRAV40A0A0B4J280 105 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 IFITM2Q01629 132 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 PIP4P2Q8N4L2 257 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 TEX45Q8NA69 505 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 DTD1Q8TEA8 209 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 AJUBAQ96IF1 538 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 CIB3Q96Q77 187 aaPredicted RBP16.9■□□□□ 0.3
VPS28-208ENST00000527797 OR51B2Q9Y5P1 312 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 POLQO75417 2590 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 NAV2Q8IVL1 2488 aa16.9■□□□□ 0.3
VPS28-208ENST00000527797 IGHV3OR16-10A0A075B7F0 116 aa16.89■□□□□ 0.29
VPS28-208ENST00000527797 SLC25A17O43808 307 aa16.89■□□□□ 0.29
VPS28-208ENST00000527797 PAX6P26367 422 aa16.89■□□□□ 0.29
VPS28-208ENST00000527797 HSPE1P61604 102 aaKnown RBP16.89■□□□□ 0.29
VPS28-208ENST00000527797 PDLIM3Q53GG5 364 aaPredicted RBP16.89■□□□□ 0.29
VPS28-208ENST00000527797 TMEM252Q8N6L7 170 aa16.89■□□□□ 0.29
VPS28-208ENST00000527797 WFDC11Q8NEX6 87 aa16.89■□□□□ 0.29
VPS28-208ENST00000527797 ZNF257Q9Y2Q1 563 aa16.89■□□□□ 0.29
VPS28-208ENST00000527797 LY86O95711 162 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 MOSP00540 346 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 IGKV1D-33P01593 117 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 IGKV1-33P01594 117 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 EWSR1Q01844 656 aaKnown RBP eCLIP16.88■□□□□ 0.29
VPS28-208ENST00000527797 PSG5Q15238 335 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 SPINK9Q5DT21 86 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 ZDHHC16Q969W1 377 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 CLCC1Q96S66 551 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 TCF19Q9Y242 345 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 ABCA12Q86UK0 2595 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 CENPEQ02224 2701 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 IGSF23A1L1A6 192 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 TAAR5O14804 337 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 FGF2P09038 288 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 RPL8P62917 257 aaKnown RBP16.88■□□□□ 0.29
VPS28-208ENST00000527797 RUSC1-AS1Q66K80 236 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 SLC51BQ86UW2 128 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 OR2T10Q8NGZ9 312 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 ABCA2Q9BZC7 2435 aa16.88■□□□□ 0.29
VPS28-208ENST00000527797 H3BP45 60 aa16.87■□□□□ 0.29
VPS28-208ENST00000527797 SNRNP70P08621 437 aaKnown RBP16.87■□□□□ 0.29
VPS28-208ENST00000527797 CNTFRP26992 372 aa16.87■□□□□ 0.29
VPS28-208ENST00000527797 BRS3P32247 399 aa16.87■□□□□ 0.29
VPS28-208ENST00000527797 HES1Q14469 280 aa16.87■□□□□ 0.29
VPS28-208ENST00000527797 OR5B3Q8NH48 314 aa16.87■□□□□ 0.29
VPS28-208ENST00000527797 GCN1Q92616 2671 aaKnown RBP16.87■□□□□ 0.29
VPS28-208ENST00000527797 SPDEFO95238 335 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 AVPP01185 164 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 CRYGBP07316 175 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 IGHV4-38-2P0DP08 117 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 NHLH2Q02577 135 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 BAXQ07812 192 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 HNF4GQ14541 408 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 SPANXN5Q5MJ07 72 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 CYB5R2Q6BCY4 276 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 CLEC9AQ6UXN8 241 aa16.86■□□□□ 0.29
VPS28-208ENST00000527797 OR8H1Q8NGG4 311 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms