RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SOHLH1Q5JUK2 328 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 ZNF506Q5JVG8 444 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 SLC25A48Q6ZT89 311 aaKnown RBP10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 VKORC1L1Q8N0U8 176 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 NEUROG1Q92886 237 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 ZNF251Q9BRH9 671 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 VSIRQ9H7M9 311 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 TMEM140Q9NV12 185 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 CCL21O00585 134 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 MMP23AO75900 390 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 DAOP14920 347 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 FGF7P21781 194 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 CHRNB4P30926 498 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 RELBQ01201 579 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 EFNB3Q15768 340 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 FBXL19-AS1Q494R0 122 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 PDLIM3Q53GG5 364 aaPredicted RBP10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 AKIRIN2Q53H80 203 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 CENPVQ7Z7K6 275 aaPredicted RBP10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 ST6GALNAC3Q8NDV1 305 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 CLDND2Q8NHS1 167 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 MBD3L1Q8WWY6 194 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 FAM90A27PA6NNH2 459 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 C15orf62A8K5M9 175 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 B9A039 149 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 M0R036 132 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 NDUFB3O43676 98 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 HRASP01112 189 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 HSPB1P04792 205 aaKnown RBP10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 ELLP55199 621 aaPredicted RBP10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 ICAM4Q14773 271 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 VWC2Q2TAL6 325 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 LRRC10Q5BKY1 277 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 ZNF787Q6DD87 383 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 ZNF429Q86V71 674 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 ZNF383Q8NA42 475 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 RCC1LQ96I51 464 aaKnown RBP10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 ZNF714Q96N38 554 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 RPS10P5Q9NQ39 176 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 SMCO4Q9NRQ5 59 aa10.63□□□□□ -0.71
SPTLC1-201ENST00000262554 CEP295Q9C0D2 2601 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 H7C2Y5 167 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 IFNA10P01566 189 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 MBP02144 154 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 RPS16P62249 146 aaKnown RBP10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 KHDC3LQ587J8 217 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 AWAT1Q58HT5 328 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 HEPN1Q6WQI6 88 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 ZNF709Q8N972 641 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 RHOVQ96L33 236 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 AIFM2Q9BRQ8 373 aa10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 HEYLQ9NQ87 328 aaPredicted RBP10.62□□□□□ -0.71
SPTLC1-201ENST00000262554 TNFRSF13BO14836 293 aaPredicted RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 ARG1P05089 322 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 SNRNP70P08621 437 aaKnown RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 SRP19P09132 144 aaKnown RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 ZNF726P1Q15940 193 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 RTL8BQ17RB0 113 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 LCN15Q6UWW0 184 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 LINC01560Q8TB33 94 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 RXFP4Q8TDU9 374 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 ZCCHC14Q8WYQ9 949 aaKnown RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 H1FXQ92522 213 aaKnown RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 GNG13Q9P2W3 67 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 BSNQ9UPA5 3926 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 TET2Q6N021 2002 aaPredicted RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 TRAV3A0A0B4J244 114 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 IGHV1-69-2A0A0G2JMI3 117 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 LOC102723971A0A1B0GUV8 181 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 C7orf77A4D0Y5 90 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 MAP1LC3B2A6NCE7 125 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 C15orf61A6NNL5 157 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 C17orf112F2Z3M2 114 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 VDAC2P45880 294 aaPredicted RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 HOXA1P49639 335 aaPredicted RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 RHEBQ15382 184 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 HFEQ30201 348 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 TMEM200BQ69YZ2 307 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 OR4A47Q6IF82 309 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 LYPD2Q6UXB3 125 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 RAB39BQ96DA2 213 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 NPCDR1Q9BY65 106 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 MAP1LC3BQ9GZQ8 125 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 SLC39A9Q9NUM3 307 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 CISD1Q9NZ45 108 aaKnown RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 TCF19Q9Y242 345 aa10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 FOXA2Q9Y261 457 aaPredicted RBP10.61□□□□□ -0.71
SPTLC1-201ENST00000262554 NDUFA2O43678 99 aa10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 CCL3L1P16619 93 aa10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 FGF8P55075 233 aaPredicted RBP10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 TFF3Q07654 80 aa10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 HNF4GQ14541 408 aa10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 POU2AF1Q16633 256 aa10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 SSX7Q7RTT5 188 aa10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 C20orf24Q9BUV8 137 aa10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 KAAG1Q9UBP8 84 aa10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 PUS1Q9Y606 427 aaKnown RBP eCLIP10.6□□□□□ -0.71
SPTLC1-201ENST00000262554 DVL1O14640 695 aa10.59□□□□□ -0.71
SPTLC1-201ENST00000262554 FCN3O75636 299 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms