RNA–Protein interactions for RNA: YPL010W

RET3, Transcript of Zeta subunit of the coatomer complex (COPI), yeast

Gene RET3, Length 570 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RET3	YPL010W	MAK31	P23059	88 aa		4.57	□□□□□ -1.68
RET3	YPL010W	KAR4	P25583	335 aa		4.57	□□□□□ -1.68
RET3	YPL010W	MSS51	P32335	436 aa		4.57	□□□□□ -1.68
RET3	YPL010W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
RET3	YPL010W	RFC1	P38630	861 aa	Known RBP	4.57	□□□□□ -1.68
RET3	YPL010W	MBP1	P39678	833 aa		4.57	□□□□□ -1.68
RET3	YPL010W	BUD16	P39988	312 aa		4.57	□□□□□ -1.68
RET3	YPL010W	BUL1	P48524	976 aa		4.57	□□□□□ -1.68
RET3	YPL010W	SFB2	P53953	876 aa		4.57	□□□□□ -1.68
RET3	YPL010W	SUE1	Q06524	206 aa		4.57	□□□□□ -1.68
RET3	YPL010W	VIP1	Q06685	1146 aa	Known RBP	4.57	□□□□□ -1.68
RET3	YPL010W	UPC2	Q12151	913 aa		4.57	□□□□□ -1.68
RET3	YPL010W	TPM1	P17536	199 aa	Known RBP	4.56	□□□□□ -1.68
RET3	YPL010W	STE14	P32584	239 aa		4.56	□□□□□ -1.68
RET3	YPL010W	DID4	P36108	232 aa		4.56	□□□□□ -1.68
RET3	YPL010W	VBA5	P36172	582 aa		4.56	□□□□□ -1.68
RET3	YPL010W	TSL1	P38427	1098 aa	Known RBP	4.56	□□□□□ -1.68
RET3	YPL010W	OPT1	P40897	799 aa		4.56	□□□□□ -1.68
RET3	YPL010W	MYO5	Q04439	1219 aa	Known RBP	4.56	□□□□□ -1.68
RET3	YPL010W	FAL1	Q12099	399 aa	Known RBP	4.56	□□□□□ -1.68
RET3	YPL010W	CDC16	P09798	840 aa		4.55	□□□□□ -1.68
RET3	YPL010W	UBC1	P21734	215 aa	Known RBP	4.55	□□□□□ -1.68
RET3	YPL010W	KIN82	P25341	720 aa		4.55	□□□□□ -1.68
RET3	YPL010W	EFT1	P32324	842 aa	Known RBP	4.55	□□□□□ -1.68
RET3	YPL010W	YPT53	P36019	220 aa		4.55	□□□□□ -1.68
RET3	YPL010W	MRPL7	P36519	292 aa		4.55	□□□□□ -1.68
RET3	YPL010W	KTR4	P38131	464 aa		4.55	□□□□□ -1.68
RET3	YPL010W	STB5	P38699	743 aa		4.55	□□□□□ -1.68
RET3	YPL010W	YEL025C	P39991	1188 aa		4.55	□□□□□ -1.68
RET3	YPL010W	YER158C	P40095	573 aa		4.55	□□□□□ -1.68
RET3	YPL010W	RAI1	P53063	387 aa	Known RBP	4.55	□□□□□ -1.68
RET3	YPL010W	OPI10	Q08202	246 aa		4.55	□□□□□ -1.68
RET3	YPL010W	DSE3	Q08729	430 aa		4.55	□□□□□ -1.68
RET3	YPL010W	PRC1	P00729	532 aa		4.54	□□□□□ -1.68
RET3	YPL010W	TRP4	P07285	380 aa	Predicted RBP	4.54	□□□□□ -1.68
RET3	YPL010W	SRP54	P20424	541 aa	Known RBP	4.54	□□□□□ -1.68
RET3	YPL010W	CDC48	P25694	835 aa	Known RBP	4.54	□□□□□ -1.68
RET3	YPL010W	PPZ1	P26570	692 aa		4.54	□□□□□ -1.68
RET3	YPL010W	MRP8	P35719	219 aa		4.54	□□□□□ -1.68
RET3	YPL010W	DRE2	P36152	348 aa		4.54	□□□□□ -1.68
RET3	YPL010W	MOH1	P38191	138 aa		4.54	□□□□□ -1.68
RET3	YPL010W	SLX1	P38324	304 aa		4.54	□□□□□ -1.68
RET3	YPL010W	NDT80	P38830	627 aa		4.54	□□□□□ -1.68
RET3	YPL010W	SIT1	P39980	628 aa		4.54	□□□□□ -1.68
RET3	YPL010W	MAD1	P40957	749 aa		4.54	□□□□□ -1.68
RET3	YPL010W	YLR455W	Q06188	304 aa		4.54	□□□□□ -1.68
RET3	YPL010W	WHI4	Q07655	649 aa	Known RBP	4.54	□□□□□ -1.68
RET3	YPL010W	ARP6	Q12509	438 aa		4.54	□□□□□ -1.68
RET3	YPL010W	FAF1	P40546	346 aa	Predicted RBP	4.53	□□□□□ -1.68
RET3	YPL010W	ALT2	P52892	507 aa		4.53	□□□□□ -1.68
RET3	YPL010W	ZPR1	P53303	486 aa	Known RBP	4.53	□□□□□ -1.68
RET3	YPL010W	HDA1	P53973	706 aa		4.53	□□□□□ -1.68
RET3	YPL010W	PNG1	Q02890	363 aa		4.53	□□□□□ -1.68
RET3	YPL010W	FPR4	Q06205	392 aa	Predicted RBP	4.53	□□□□□ -1.68
RET3	YPL010W	TFC6	Q06339	672 aa		4.53	□□□□□ -1.68
RET3	YPL010W	VAS1	P07806	1104 aa	Known RBP	4.52	□□□□□ -1.69
RET3	YPL010W	MBR1	P23493	339 aa		4.52	□□□□□ -1.69
RET3	YPL010W	SUL1	P38359	859 aa		4.52	□□□□□ -1.69
RET3	YPL010W	CSM2	P40465	213 aa		4.52	□□□□□ -1.69
RET3	YPL010W	CTR1	P49573	406 aa		4.52	□□□□□ -1.69
RET3	YPL010W	CWC24	P53769	259 aa		4.52	□□□□□ -1.69
RET3	YPL010W	YNL134C	P53912	376 aa	Known RBP	4.52	□□□□□ -1.69
RET3	YPL010W	MUK1	Q02866	612 aa		4.52	□□□□□ -1.69
RET3	YPL010W	PHM6	Q05637	104 aa		4.52	□□□□□ -1.69
RET3	YPL010W	HCR1	Q05775	265 aa	Known RBP	4.52	□□□□□ -1.69
RET3	YPL010W	PIG1	Q06216	648 aa		4.52	□□□□□ -1.69
RET3	YPL010W	CRD1	Q07560	283 aa		4.52	□□□□□ -1.69
RET3	YPL010W	YLR040C	Q07988	224 aa		4.52	□□□□□ -1.69
RET3	YPL010W	RIM20	Q12033	661 aa		4.52	□□□□□ -1.69
RET3	YPL010W	HFI1	Q12060	488 aa		4.52	□□□□□ -1.69
RET3	YPL010W	HIF1	Q12373	385 aa		4.52	□□□□□ -1.69
RET3	YPL010W	CIT1	P00890	479 aa		4.51	□□□□□ -1.69
RET3	YPL010W	ADE8	P04161	214 aa		4.51	□□□□□ -1.69
RET3	YPL010W	SED4	P25365	1065 aa		4.51	□□□□□ -1.69
RET3	YPL010W	IMG2	P25642	146 aa	Predicted RBP	4.51	□□□□□ -1.69
RET3	YPL010W	SEC21	P32074	935 aa	Known RBP	4.51	□□□□□ -1.69
RET3	YPL010W	IMP2'	P32351	346 aa		4.51	□□□□□ -1.69
RET3	YPL010W	AFR1	P33304	620 aa		4.51	□□□□□ -1.69
RET3	YPL010W	ESL1	P40456	1118 aa		4.51	□□□□□ -1.69
RET3	YPL010W	MOB1	P40484	314 aa		4.51	□□□□□ -1.69
RET3	YPL010W	ASE1	P50275	885 aa		4.51	□□□□□ -1.69
RET3	YPL010W	CNM67	P53865	581 aa	Known RBP	4.51	□□□□□ -1.69
RET3	YPL010W	SLU7	Q02775	382 aa	Known RBP	4.51	□□□□□ -1.69
RET3	YPL010W	YDR341C	Q05506	607 aa	Known RBP	4.51	□□□□□ -1.69
RET3	YPL010W	IRC10	Q08118	586 aa		4.51	□□□□□ -1.69
RET3	YPL010W	YOL073C	Q08232	322 aa		4.51	□□□□□ -1.69
RET3	YPL010W	PCD1	Q12524	340 aa		4.51	□□□□□ -1.69
RET3	YPL010W	BET2	P20133	325 aa		4.5	□□□□□ -1.69
RET3	YPL010W	RNR3	P21672	869 aa	Known RBP	4.5	□□□□□ -1.69
RET3	YPL010W	ERG4	P25340	473 aa		4.5	□□□□□ -1.69
RET3	YPL010W	NPP1	P25353	742 aa		4.5	□□□□□ -1.69
RET3	YPL010W	ADK2	P26364	225 aa		4.5	□□□□□ -1.69
RET3	YPL010W	STE13	P33894	931 aa		4.5	□□□□□ -1.69
RET3	YPL010W	YKL069W	P36088	180 aa		4.5	□□□□□ -1.69
RET3	YPL010W	CCT3	P39077	534 aa	Known RBP	4.5	□□□□□ -1.69
RET3	YPL010W	IRR1	P40541	1150 aa		4.5	□□□□□ -1.69
RET3	YPL010W	YFL052W	P43551	465 aa		4.5	□□□□□ -1.69
RET3	YPL010W	ERG5	P54781	538 aa		4.5	□□□□□ -1.69
RET3	YPL010W	NKP2	Q06162	153 aa		4.5	□□□□□ -1.69
RET3	YPL010W	YPR196W	Q06595	470 aa		4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 18.1 ms