RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	SPDYE2	Q495Y8	402 aa		12.83	□□□□□ -0.36
SCN1A-222	ENST00000642141	LDLRAD1	Q5T700	205 aa		12.83	□□□□□ -0.36
SCN1A-222	ENST00000642141	LPIN2	Q92539	896 aa		12.83	□□□□□ -0.36
SCN1A-222	ENST00000642141	TMEM39B	Q9GZU3	492 aa		12.83	□□□□□ -0.36
SCN1A-222	ENST00000642141	CEP126	Q9P2H0	1117 aa		12.83	□□□□□ -0.36
SCN1A-222	ENST00000642141	KIF16B	Q96L93	1317 aa		12.83	□□□□□ -0.36
SCN1A-222	ENST00000642141	PPP1R12B	O60237	982 aa	Predicted RBP	12.82	□□□□□ -0.36
SCN1A-222	ENST00000642141	USP2	O75604	605 aa	Predicted RBP	12.82	□□□□□ -0.36
SCN1A-222	ENST00000642141	TRIM27	P14373	513 aa		12.82	□□□□□ -0.36
SCN1A-222	ENST00000642141	ADORA1	P30542	326 aa		12.82	□□□□□ -0.36
SCN1A-222	ENST00000642141	ATP2B3	Q16720	1220 aa		12.82	□□□□□ -0.36
SCN1A-222	ENST00000642141	INTS3	Q68E01	1043 aa	Known RBP	12.82	□□□□□ -0.36
SCN1A-222	ENST00000642141	SAGE1	Q9NXZ1	904 aa		12.82	□□□□□ -0.36
SCN1A-222	ENST00000642141	SSC5D	A1L4H1	1573 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	IPO8	O15397	1037 aa	Known RBP	12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	SRGAP3	O43295	1099 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	TIMM10	P62072	90 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	SPRYD7	Q5W111	196 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	TBC1D22A	Q8WUA7	517 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	ARHGAP45	Q92619	1136 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	TEKT1	Q969V4	418 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	R3HDML	Q9H3Y0	253 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	PPP2R3B	Q9Y5P8	575 aa		12.81	□□□□□ -0.36
SCN1A-222	ENST00000642141	CIAO1	O76071	339 aa		12.8	□□□□□ -0.36
SCN1A-222	ENST00000642141	GNAI3	P08754	354 aa		12.8	□□□□□ -0.36
SCN1A-222	ENST00000642141	IL15	P40933	162 aa	Predicted RBP	12.8	□□□□□ -0.36
SCN1A-222	ENST00000642141	PHKA1	P46020	1223 aa		12.8	□□□□□ -0.36
SCN1A-222	ENST00000642141	TM4SF4	P48230	202 aa		12.8	□□□□□ -0.36
SCN1A-222	ENST00000642141	ATF7IP	Q6VMQ6	1270 aa		12.8	□□□□□ -0.36
SCN1A-222	ENST00000642141	REM2	Q8IYK8	340 aa	Predicted RBP	12.8	□□□□□ -0.36
SCN1A-222	ENST00000642141	HDAC5	Q9UQL6	1122 aa		12.8	□□□□□ -0.36
SCN1A-222	ENST00000642141	IREB2	P48200	963 aa	Known RBP	12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	TFCP2	Q12800	502 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	TNFAIP1	Q13829	316 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	DIXDC1	Q155Q3	683 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	APOBEC3H	Q6NTF7	200 aa	Known RBP	12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	TMEM57	Q8N5G2	664 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	CNKSR2	Q8WXI2	1034 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	WNK4	Q96J92	1243 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	TEPSIN	Q96N21	525 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	ELP3	Q9H9T3	547 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	COPRS	Q9NQ92	184 aa		12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	12.79	□□□□□ -0.36
SCN1A-222	ENST00000642141	COL1A1	P02452	1464 aa	Predicted RBP	12.78	□□□□□ -0.36
SCN1A-222	ENST00000642141	PRDX5	P30044	214 aa		12.78	□□□□□ -0.36
SCN1A-222	ENST00000642141	GJA5	P36382	358 aa		12.78	□□□□□ -0.36
SCN1A-222	ENST00000642141	TNNI2	P48788	182 aa		12.78	□□□□□ -0.36
SCN1A-222	ENST00000642141	SREBF2	Q12772	1141 aa		12.78	□□□□□ -0.36
SCN1A-222	ENST00000642141	WDR66	Q8TBY9	1149 aa		12.78	□□□□□ -0.36
SCN1A-222	ENST00000642141	ZDHHC15	Q96MV8	337 aa		12.78	□□□□□ -0.36
SCN1A-222	ENST00000642141	GNL3L	Q9NVN8	582 aa	Known RBP	12.78	□□□□□ -0.36
SCN1A-222	ENST00000642141	PNMA6E	A0A0J9YXQ4	647 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	GNAI2	P04899	355 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	HDLBP	Q00341	1268 aa	Known RBP	12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	TCP10	Q12799	353 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	MAP3K11	Q16584	847 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	ZKSCAN2	Q63HK3	967 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	CCDC102B	Q68D86	513 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	ZNF296	Q8WUU4	475 aa	Predicted RBP	12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	NEUROD6	Q96NK8	337 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	C1orf115	Q9H7X2	142 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	TMOD2	Q9NZR1	351 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	FBXO3	Q9UK99	471 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	AKAP11	Q9UKA4	1901 aa		12.77	□□□□□ -0.37
SCN1A-222	ENST00000642141	MANSC4	A6NHS7	340 aa	Predicted RBP	12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	GPR25	O00155	361 aa		12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	LDHB	P07195	334 aa	Known RBP	12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	MIGA2	Q7L4E1	593 aa		12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	IFNL1	Q8IU54	200 aa		12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	ANKRD13A	Q8IZ07	590 aa		12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	OPTN	Q96CV9	577 aa		12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	XAGE2	Q96GT9	111 aa		12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141	DAGLA	Q9Y4D2	1042 aa		12.76	□□□□□ -0.37
SCN1A-222	ENST00000642141		A0A1B0GUL7	405 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	IGF2BP3	O00425	579 aa	Known RBP eCLIP	12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	MAST3	O60307	1309 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	MAP3K9	P80192	1104 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	RASGRF1	Q13972	1273 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	VGLL4	Q14135	290 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	ECM29	Q5VYK3	1845 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	CDC42EP5	Q6NZY7	148 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	HHIPL2	Q6UWX4	724 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	CTU1	Q7Z7A3	348 aa	Known RBP	12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	ZKSCAN4	Q969J2	545 aa	Predicted RBP	12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	MRI	Q9BWK5	157 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	USP40	Q9NVE5	1235 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	ABCF2	Q9UG63	623 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	DENND2A	Q9ULE3	1009 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	SUGT1	Q9Y2Z0	365 aa		12.75	□□□□□ -0.37
SCN1A-222	ENST00000642141	ZBTB48	P10074	688 aa	Predicted RBP	12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	RLBP1	P12271	317 aa		12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	NFIA	Q12857	509 aa		12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	G3BP1	Q13283	466 aa	Known RBP eCLIP	12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	MTX1	Q13505	466 aa		12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	GORAB	Q5T7V8	394 aa		12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	PI16	Q6UXB8	463 aa		12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	ITPRIP	Q8IWB1	547 aa		12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	ZFPM1	Q8IX07	1006 aa		12.74	□□□□□ -0.37
SCN1A-222	ENST00000642141	FTSJ3	Q8IY81	847 aa	Known RBP	12.74	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms