RNA–Protein interactions for RNA: ENST00000639447.1

GRN-222, Transcript of granulin precursor, human

TSL 2 BASIC

Gene GRN, Length 1,314 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GRN-222	ENST00000639447	CLMN	Q96JQ2	1002 aa		18.42	■□□□□ 0.54
GRN-222	ENST00000639447	API5	Q9BZZ5	524 aa	Known RBP	18.42	■□□□□ 0.54
GRN-222	ENST00000639447	MAST3	O60307	1309 aa		18.42	■□□□□ 0.54
GRN-222	ENST00000639447	EYA2	O00167	538 aa		18.41	■□□□□ 0.54
GRN-222	ENST00000639447	ALDH1A1	P00352	501 aa		18.41	■□□□□ 0.54
GRN-222	ENST00000639447	SLC5A1	P13866	664 aa		18.41	■□□□□ 0.54
GRN-222	ENST00000639447	NOM1	Q5C9Z4	860 aa	Known RBP	18.41	■□□□□ 0.54
GRN-222	ENST00000639447	ANKRD13A	Q8IZ07	590 aa		18.41	■□□□□ 0.54
GRN-222	ENST00000639447	TRMT2A	Q8IZ69	625 aa	Known RBP	18.41	■□□□□ 0.54
GRN-222	ENST00000639447	TEKT1	Q969V4	418 aa		18.41	■□□□□ 0.54
GRN-222	ENST00000639447	TCP10L2	B9ZVM9	353 aa		18.4	■□□□□ 0.54
GRN-222	ENST00000639447	GPR25	O00155	361 aa		18.4	■□□□□ 0.54
GRN-222	ENST00000639447	RFX5	P48382	616 aa	Predicted RBP	18.4	■□□□□ 0.54
GRN-222	ENST00000639447	RGS19	P49795	217 aa		18.4	■□□□□ 0.54
GRN-222	ENST00000639447	BCAM	P50895	628 aa		18.4	■□□□□ 0.54
GRN-222	ENST00000639447	CFHR5	Q9BXR6	569 aa		18.4	■□□□□ 0.54
GRN-222	ENST00000639447	TMOD2	Q9NZR1	351 aa		18.4	■□□□□ 0.54
GRN-222	ENST00000639447	FGFR2	P21802	821 aa		18.39	■□□□□ 0.53
GRN-222	ENST00000639447	HDLBP	Q00341	1268 aa	Known RBP	18.39	■□□□□ 0.53
GRN-222	ENST00000639447	GRIK5	Q16478	980 aa		18.39	■□□□□ 0.53
GRN-222	ENST00000639447	NOB1	Q9ULX3	412 aa	Known RBP	18.39	■□□□□ 0.53
GRN-222	ENST00000639447	HDAC5	Q9UQL6	1122 aa		18.39	■□□□□ 0.53
GRN-222	ENST00000639447	FKTN	O75072	461 aa		18.38	■□□□□ 0.53
GRN-222	ENST00000639447	INHBE	P58166	350 aa		18.38	■□□□□ 0.53
GRN-222	ENST00000639447	PKN2	Q16513	984 aa	Known RBP	18.38	■□□□□ 0.53
GRN-222	ENST00000639447	IFNL1	Q8IU54	200 aa		18.38	■□□□□ 0.53
GRN-222	ENST00000639447	LPIN2	Q92539	896 aa		18.38	■□□□□ 0.53
GRN-222	ENST00000639447	SUGT1	Q9Y2Z0	365 aa		18.38	■□□□□ 0.53
GRN-222	ENST00000639447	OTOF	Q9HC10	1997 aa		18.38	■□□□□ 0.53
GRN-222	ENST00000639447	USP2	O75604	605 aa	Predicted RBP	18.37	■□□□□ 0.53
GRN-222	ENST00000639447	SOX10	P56693	466 aa		18.37	■□□□□ 0.53
GRN-222	ENST00000639447	TMEM39B	Q9GZU3	492 aa		18.37	■□□□□ 0.53
GRN-222	ENST00000639447	SIL1	Q9H173	461 aa		18.37	■□□□□ 0.53
GRN-222	ENST00000639447	ELP3	Q9H9T3	547 aa		18.37	■□□□□ 0.53
GRN-222	ENST00000639447	FBXO3	Q9UK99	471 aa		18.37	■□□□□ 0.53
GRN-222	ENST00000639447	LAMB1	P07942	1786 aa		18.37	■□□□□ 0.53
GRN-222	ENST00000639447	CIAO1	O76071	339 aa		18.36	■□□□□ 0.53
GRN-222	ENST00000639447	ATP2B3	Q16720	1220 aa		18.36	■□□□□ 0.53
GRN-222	ENST00000639447	CDAN1	Q8IWY9	1227 aa		18.36	■□□□□ 0.53
GRN-222	ENST00000639447	WDR66	Q8TBY9	1149 aa		18.36	■□□□□ 0.53
GRN-222	ENST00000639447	ZDHHC15	Q96MV8	337 aa		18.36	■□□□□ 0.53
GRN-222	ENST00000639447	TEPSIN	Q96N21	525 aa		18.36	■□□□□ 0.53
GRN-222	ENST00000639447	HPS5	Q9UPZ3	1129 aa		18.36	■□□□□ 0.53
GRN-222	ENST00000639447	LRRFIP2	Q9Y608	721 aa	Known RBP	18.36	■□□□□ 0.53
GRN-222	ENST00000639447	IGF2BP3	O00425	579 aa	Known RBP eCLIP	18.35	■□□□□ 0.53
GRN-222	ENST00000639447	GJA5	P36382	358 aa		18.35	■□□□□ 0.53
GRN-222	ENST00000639447	CACNB3	P54284	484 aa		18.35	■□□□□ 0.53
GRN-222	ENST00000639447	OTUD7B	Q6GQQ9	843 aa		18.35	■□□□□ 0.53
GRN-222	ENST00000639447	ATG9A	Q7Z3C6	839 aa		18.35	■□□□□ 0.53
GRN-222	ENST00000639447	OPTN	Q96CV9	577 aa		18.35	■□□□□ 0.53
GRN-222	ENST00000639447	CSAD	Q9Y600	493 aa		18.35	■□□□□ 0.53
GRN-222	ENST00000639447	R3HDML	Q9H3Y0	253 aa		18.34	■□□□□ 0.53
GRN-222	ENST00000639447	GNL3L	Q9NVN8	582 aa	Known RBP	18.34	■□□□□ 0.53
GRN-222	ENST00000639447	CEP126	Q9P2H0	1117 aa		18.34	■□□□□ 0.53
GRN-222	ENST00000639447	RPAP1	Q9BWH6	1393 aa	Predicted RBP	18.34	■□□□□ 0.53
GRN-222	ENST00000639447	RARS	P54136	660 aa	Known RBP	18.33	■□□□□ 0.53
GRN-222	ENST00000639447	VGLL4	Q14135	290 aa		18.33	■□□□□ 0.53
GRN-222	ENST00000639447	FBXO46	Q6PJ61	603 aa	Predicted RBP	18.33	■□□□□ 0.53
GRN-222	ENST00000639447	HOOK2	Q96ED9	719 aa		18.33	■□□□□ 0.53
GRN-222	ENST00000639447	MEIS3	Q99687	375 aa		18.33	■□□□□ 0.53
GRN-222	ENST00000639447	MYH13	Q9UKX3	1938 aa		18.32	■□□□□ 0.52
GRN-222	ENST00000639447	IL15	P40933	162 aa	Predicted RBP	18.32	■□□□□ 0.52
GRN-222	ENST00000639447	HHIPL2	Q6UWX4	724 aa		18.32	■□□□□ 0.52
GRN-222	ENST00000639447	FAM83A	Q86UY5	434 aa		18.32	■□□□□ 0.52
GRN-222	ENST00000639447	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	18.32	■□□□□ 0.52	4e-9	■□□□□ 8.4
GRN-222	ENST00000639447	MRI	Q9BWK5	157 aa		18.32	■□□□□ 0.52
GRN-222	ENST00000639447	MAP3K9	P80192	1104 aa		18.31	■□□□□ 0.52
GRN-222	ENST00000639447	FKBP1C	Q5VVH2	108 aa		18.31	■□□□□ 0.52
GRN-222	ENST00000639447	APOBEC3H	Q6NTF7	200 aa	Known RBP	18.31	■□□□□ 0.52
GRN-222	ENST00000639447	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	18.31	■□□□□ 0.52
GRN-222	ENST00000639447	PA2G4	Q9UQ80	394 aa	Known RBP	18.31	■□□□□ 0.52
GRN-222	ENST00000639447	SEMA3E	O15041	775 aa		18.3	■□□□□ 0.52
GRN-222	ENST00000639447	GNAI3	P08754	354 aa		18.3	■□□□□ 0.52
GRN-222	ENST00000639447	CRHR2	Q13324	411 aa		18.3	■□□□□ 0.52
GRN-222	ENST00000639447	DCAF15	Q66K64	600 aa		18.3	■□□□□ 0.52
GRN-222	ENST00000639447	ARHGAP45	Q92619	1136 aa		18.3	■□□□□ 0.52
GRN-222	ENST00000639447	WRNIP1	Q96S55	665 aa		18.3	■□□□□ 0.52
GRN-222	ENST00000639447	COPRS	Q9NQ92	184 aa		18.3	■□□□□ 0.52
GRN-222	ENST00000639447	DENND2A	Q9ULE3	1009 aa		18.3	■□□□□ 0.52
GRN-222	ENST00000639447	CCL15-CCL14	A0A0B4J2E2	113 aa		18.29	■□□□□ 0.52
GRN-222	ENST00000639447	TESPA1	A2RU30	521 aa	Predicted RBP	18.29	■□□□□ 0.52
GRN-222	ENST00000639447	LDHB	P07195	334 aa	Known RBP	18.29	■□□□□ 0.52
GRN-222	ENST00000639447	CCL15	Q16663	113 aa		18.29	■□□□□ 0.52
GRN-222	ENST00000639447	INTS3	Q68E01	1043 aa	Known RBP	18.29	■□□□□ 0.52
GRN-222	ENST00000639447	CNKSR2	Q8WXI2	1034 aa		18.29	■□□□□ 0.52
GRN-222	ENST00000639447	OTUD5	Q96G74	571 aa		18.29	■□□□□ 0.52
GRN-222	ENST00000639447	ERO1A	Q96HE7	468 aa		18.29	■□□□□ 0.52
GRN-222	ENST00000639447	DAGLA	Q9Y4D2	1042 aa		18.29	■□□□□ 0.52
GRN-222	ENST00000639447	TRIM17	Q9Y577	477 aa		18.29	■□□□□ 0.52
GRN-222	ENST00000639447	SPDYE5	A6NIY4	337 aa		18.28	■□□□□ 0.52
GRN-222	ENST00000639447	PRDX5	P30044	214 aa		18.28	■□□□□ 0.52
GRN-222	ENST00000639447	PHKA1	P46020	1223 aa		18.28	■□□□□ 0.52
GRN-222	ENST00000639447	GTF2A2	P52657	109 aa		18.28	■□□□□ 0.52
GRN-222	ENST00000639447	DIXDC1	Q155Q3	683 aa		18.28	■□□□□ 0.52
GRN-222	ENST00000639447	SALL1	Q9NSC2	1324 aa		18.28	■□□□□ 0.52
GRN-222	ENST00000639447	IPO8	O15397	1037 aa	Known RBP	18.27	■□□□□ 0.52
GRN-222	ENST00000639447	SRGAP3	O43295	1099 aa		18.27	■□□□□ 0.52
GRN-222	ENST00000639447	ZGPAT	Q8N5A5	531 aa	Known RBP	18.27	■□□□□ 0.52
GRN-222	ENST00000639447	BRI3BP	Q8WY22	251 aa		18.27	■□□□□ 0.52
GRN-222	ENST00000639447	MS4A4A	Q96JQ5	239 aa		18.27	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms