RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 CTU1Q7Z7A3 348 aaKnown RBP20.29■□□□□ 0.84
SNX1-213ENST00000561026 CLMNQ96JQ2 1002 aa20.29■□□□□ 0.84
SNX1-213ENST00000561026 API5Q9BZZ5 524 aaKnown RBP20.29■□□□□ 0.84
SNX1-213ENST00000561026 IREB2P48200 963 aaKnown RBP20.28■□□□□ 0.84
SNX1-213ENST00000561026 ZNF296Q8WUU4 475 aaPredicted RBP20.28■□□□□ 0.84
SNX1-213ENST00000561026 ZBTB48P10074 688 aaPredicted RBP20.27■□□□□ 0.84
SNX1-213ENST00000561026 INHBEP58166 350 aa20.27■□□□□ 0.84
SNX1-213ENST00000561026 NOM1Q5C9Z4 860 aaKnown RBP20.27■□□□□ 0.84
SNX1-213ENST00000561026 ATG9AQ7Z3C6 839 aa20.27■□□□□ 0.84
SNX1-213ENST00000561026 LPIN2Q92539 896 aa20.27■□□□□ 0.84
SNX1-213ENST00000561026 MRIQ9BWK5 157 aa20.27■□□□□ 0.84
SNX1-213ENST00000561026 CFHR5Q9BXR6 569 aa20.27■□□□□ 0.84
SNX1-213ENST00000561026 MANSC4A6NHS7 340 aaPredicted RBP20.26■□□□□ 0.83
SNX1-213ENST00000561026 GPR25O00155 361 aa20.26■□□□□ 0.83
SNX1-213ENST00000561026 RARSP54136 660 aaKnown RBP20.26■□□□□ 0.83
SNX1-213ENST00000561026 WNK4Q96J92 1243 aa20.26■□□□□ 0.83
SNX1-213ENST00000561026 TEPSINQ96N21 525 aa20.26■□□□□ 0.83
SNX1-213ENST00000561026 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.26■□□□□ 0.83
SNX1-213ENST00000561026 FBXO3Q9UK99 471 aa20.26■□□□□ 0.83
SNX1-213ENST00000561026 HDAC5Q9UQL6 1122 aa20.26■□□□□ 0.83
SNX1-213ENST00000561026 SUGT1Q9Y2Z0 365 aa20.26■□□□□ 0.83
SNX1-213ENST00000561026 TCP10L2B9ZVM9 353 aa20.25■□□□□ 0.83
SNX1-213ENST00000561026 CIAO1O76071 339 aa20.25■□□□□ 0.83
SNX1-213ENST00000561026 ALDH1A1P00352 501 aa20.25■□□□□ 0.83
SNX1-213ENST00000561026 SLC5A1P13866 664 aa20.25■□□□□ 0.83
SNX1-213ENST00000561026 ANKRD13AQ8IZ07 590 aa20.25■□□□□ 0.83
SNX1-213ENST00000561026 TEKT1Q969V4 418 aa20.25■□□□□ 0.83
SNX1-213ENST00000561026 ARAP2Q8WZ64 1704 aa20.25■□□□□ 0.83
SNX1-213ENST00000561026 TNNI2P48788 182 aa20.24■□□□□ 0.83
SNX1-213ENST00000561026 MLLT1Q03111 559 aaPredicted RBP20.24■□□□□ 0.83
SNX1-213ENST00000561026 ARHGAP45Q92619 1136 aa20.24■□□□□ 0.83
SNX1-213ENST00000561026 ZDHHC15Q96MV8 337 aa20.24■□□□□ 0.83
SNX1-213ENST00000561026 TMEM39BQ9GZU3 492 aa20.24■□□□□ 0.83
SNX1-213ENST00000561026 LRRFIP2Q9Y608 721 aaKnown RBP20.24■□□□□ 0.83
SNX1-213ENST00000561026 PKN2Q16513 984 aaKnown RBP20.23■□□□□ 0.83
SNX1-213ENST00000561026 IFNL1Q8IU54 200 aa20.23■□□□□ 0.83
SNX1-213ENST00000561026 CDAN1Q8IWY9 1227 aa20.23■□□□□ 0.83
SNX1-213ENST00000561026 SIL1Q9H173 461 aa20.23■□□□□ 0.83
SNX1-213ENST00000561026 R3HDMLQ9H3Y0 253 aa20.23■□□□□ 0.83
SNX1-213ENST00000561026 CEP126Q9P2H0 1117 aa20.23■□□□□ 0.83
SNX1-213ENST00000561026 MAST3O60307 1309 aa20.23■□□□□ 0.83
SNX1-213ENST00000561026 GJA5P36382 358 aa20.21■□□□□ 0.83
SNX1-213ENST00000561026 INTS3Q68E01 1043 aaKnown RBP20.21■□□□□ 0.83
SNX1-213ENST00000561026 APOBEC3HQ6NTF7 200 aaKnown RBP20.21■□□□□ 0.83
SNX1-213ENST00000561026 HHIPL2Q6UWX4 724 aa20.21■□□□□ 0.83
SNX1-213ENST00000561026 WDR66Q8TBY9 1149 aa20.21■□□□□ 0.83
SNX1-213ENST00000561026 MEIS3Q99687 375 aa20.21■□□□□ 0.83
SNX1-213ENST00000561026 IGF2BP3O00425 579 aaKnown RBP eCLIP20.21■□□□□ 0.83
SNX1-213ENST00000561026 FKTNO75072 461 aa20.21■□□□□ 0.83
SNX1-213ENST00000561026 IL15P40933 162 aaPredicted RBP20.21■□□□□ 0.83
SNX1-213ENST00000561026 CACNB3P54284 484 aa20.21■□□□□ 0.83
SNX1-213ENST00000561026 ATP2B3Q16720 1220 aa20.21■□□□□ 0.83
SNX1-213ENST00000561026 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.21■□□□□ 0.83
SNX1-213ENST00000561026 FKBP1CQ5VVH2 108 aa20.2■□□□□ 0.82
SNX1-213ENST00000561026 ELP3Q9H9T3 547 aa20.2■□□□□ 0.82
SNX1-213ENST00000561026 COPRSQ9NQ92 184 aa20.2■□□□□ 0.82
SNX1-213ENST00000561026 TMOD2Q9NZR1 351 aa20.2■□□□□ 0.82
SNX1-213ENST00000561026 PA2G4Q9UQ80 394 aaKnown RBP20.2■□□□□ 0.82
SNX1-213ENST00000561026 MAP3K9P80192 1104 aa20.19■□□□□ 0.82
SNX1-213ENST00000561026 FAM83AQ86UY5 434 aa20.19■□□□□ 0.82
SNX1-213ENST00000561026 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.19■□□□□ 0.82
SNX1-213ENST00000561026 OPTNQ96CV9 577 aa20.19■□□□□ 0.82
SNX1-213ENST00000561026 GNL3LQ9NVN8 582 aaKnown RBP20.19■□□□□ 0.82
SNX1-213ENST00000561026 HPS5Q9UPZ3 1129 aa20.19■□□□□ 0.82
SNX1-213ENST00000561026 TESPA1A2RU30 521 aaPredicted RBP20.18■□□□□ 0.82
SNX1-213ENST00000561026 GNAI3P08754 354 aa20.18■□□□□ 0.82
SNX1-213ENST00000561026 VGLL4Q14135 290 aa20.18■□□□□ 0.82
SNX1-213ENST00000561026 OTUD7BQ6GQQ9 843 aa20.18■□□□□ 0.82
SNX1-213ENST00000561026 PTPN18Q99952 460 aa20.18■□□□□ 0.82
SNX1-213ENST00000561026 IPO8O15397 1037 aaKnown RBP20.17■□□□□ 0.82
SNX1-213ENST00000561026 MS4A4AQ96JQ5 239 aa20.17■□□□□ 0.82
SNX1-213ENST00000561026 SEMA3EO15041 775 aa20.16■□□□□ 0.82
SNX1-213ENST00000561026 SOX10P56693 466 aa20.16■□□□□ 0.82
SNX1-213ENST00000561026 CNKSR2Q8WXI2 1034 aa20.16■□□□□ 0.82
SNX1-213ENST00000561026 CSADQ9Y600 493 aa20.16■□□□□ 0.82
SNX1-213ENST00000561026 ZBTB22O15209 634 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 TRIM27P14373 513 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 PRDX5P30044 214 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 PHKA1P46020 1223 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 FBXO46Q6PJ61 603 aaPredicted RBP20.15■□□□□ 0.82
SNX1-213ENST00000561026 HOOK2Q96ED9 719 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 DENND2AQ9ULE3 1009 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 DAGLAQ9Y4D2 1042 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 LAMB1P07942 1786 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 SALL1Q9NSC2 1324 aa20.15■□□□□ 0.82
SNX1-213ENST00000561026 SRGAP3O43295 1099 aa20.14■□□□□ 0.81
SNX1-213ENST00000561026 BCAR3O75815 825 aa20.14■□□□□ 0.81
SNX1-213ENST00000561026 LDHBP07195 334 aaKnown RBP20.14■□□□□ 0.81
SNX1-213ENST00000561026 CRHR2Q13324 411 aa20.14■□□□□ 0.81
SNX1-213ENST00000561026 MTX1Q13505 466 aa20.14■□□□□ 0.81
SNX1-213ENST00000561026 DIXDC1Q155Q3 683 aa20.14■□□□□ 0.81
SNX1-213ENST00000561026 ATF7IPQ6VMQ6 1270 aa20.14■□□□□ 0.81
SNX1-213ENST00000561026 OTOFQ9HC10 1997 aa20.14■□□□□ 0.81
SNX1-213ENST00000561026 ADORA1P30542 326 aa20.13■□□□□ 0.81
SNX1-213ENST00000561026 GTF2A2P52657 109 aa20.13■□□□□ 0.81
SNX1-213ENST00000561026 TIMM10P62072 90 aa20.13■□□□□ 0.81
SNX1-213ENST00000561026 CCDC102BQ68D86 513 aa20.13■□□□□ 0.81
SNX1-213ENST00000561026 CDC42EP5Q6NZY7 148 aa20.13■□□□□ 0.81
SNX1-213ENST00000561026 OTUD5Q96G74 571 aa20.13■□□□□ 0.81
SNX1-213ENST00000561026 FAM151AQ8WW52 585 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms