RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TRIM75PA6NK02 468 aa17.23■□□□□ 0.35
CUX1-214ENST00000550008 ST5P78524 1137 aa17.23■□□□□ 0.35
CUX1-214ENST00000550008 UBA5Q9GZZ9 404 aa17.23■□□□□ 0.35
CUX1-214ENST00000550008 TMOD2Q9NZR1 351 aa17.23■□□□□ 0.35
CUX1-214ENST00000550008 PCCAP05165 728 aaPredicted RBP17.22■□□□□ 0.35
CUX1-214ENST00000550008 KIF18AQ8NI77 898 aa17.22■□□□□ 0.35
CUX1-214ENST00000550008 ADAMTS13Q76LX8 1427 aa17.22■□□□□ 0.35
CUX1-214ENST00000550008 GIGYF2Q6Y7W6 1299 aaKnown RBP17.22■□□□□ 0.35
CUX1-214ENST00000550008 PDCL2Q8N4E4 241 aa17.22■□□□□ 0.35
CUX1-214ENST00000550008 KIF2CQ99661 725 aa17.22■□□□□ 0.35
CUX1-214ENST00000550008 V9GY48 417 aaPredicted RBP17.22■□□□□ 0.35
CUX1-214ENST00000550008 IQGAP1P46940 1657 aa17.22■□□□□ 0.35
CUX1-214ENST00000550008 PDE6AP16499 860 aa17.22■□□□□ 0.35
CUX1-214ENST00000550008 SKIDA1Q1XH10 827 aa17.22■□□□□ 0.35
CUX1-214ENST00000550008 LOC102724428A0A0B4J2F2 783 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 CHGBP05060 677 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 LDHBP07195 334 aaKnown RBP17.21■□□□□ 0.35
CUX1-214ENST00000550008 SIK1P57059 783 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 ZSWIM4Q9H7M6 989 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 GPHNQ9NQX3 736 aaPredicted RBP17.21■□□□□ 0.35
CUX1-214ENST00000550008 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.21■□□□□ 0.35
CUX1-214ENST00000550008 V9GYY5 206 aaPredicted RBP17.21■□□□□ 0.35
CUX1-214ENST00000550008 MED14O60244 1454 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 MAP3K15Q6ZN16 1313 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 HIBADHP31937 336 aaKnown RBP17.21■□□□□ 0.35
CUX1-214ENST00000550008 MCM7P33993 719 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 USP28Q96RU2 1077 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 IFNKQ9P0W0 207 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 A0A087WWV3 80 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 GNAT2P19087 354 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 UBXN4Q92575 508 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 ZBTB9Q96C00 473 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 DSCC1Q9BVC3 393 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 FTOQ9C0B1 505 aaKnown RBP eCLIP17.21■□□□□ 0.35
CUX1-214ENST00000550008 CRB1P82279 1406 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 SSH2Q76I76 1423 aa17.21■□□□□ 0.35
CUX1-214ENST00000550008 DNA2P51530 1060 aa17.21■□□□□ 0.34
CUX1-214ENST00000550008 ZNF174Q15697 407 aa17.21■□□□□ 0.34
CUX1-214ENST00000550008 TRAPPC3LQ5T215 181 aa17.21■□□□□ 0.34
CUX1-214ENST00000550008 DIS3L2Q8IYB7 885 aaKnown RBP17.21■□□□□ 0.34
CUX1-214ENST00000550008 NYXQ9GZU5 481 aa17.21■□□□□ 0.34
CUX1-214ENST00000550008 ANKARQ7Z5J8 1434 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 EIF6P56537 245 aaKnown RBP17.2■□□□□ 0.34
CUX1-214ENST00000550008 HLFQ16534 295 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 CNBD1Q8NA66 436 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 RGS12O14924 1447 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 FAM160A1Q05DH4 1040 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 NUP88Q99567 741 aaPredicted RBP17.2■□□□□ 0.34
CUX1-214ENST00000550008 SPATA31A3Q5VYP0 1347 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 NR1I2O75469 434 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 KRT40Q6A162 431 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 MTERF4Q7Z6M4 381 aaKnown RBP17.2■□□□□ 0.34
CUX1-214ENST00000550008 ZC3H12CQ9C0D7 883 aaKnown RBP17.2■□□□□ 0.34
CUX1-214ENST00000550008 PRDM10Q9NQV6 1147 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 TCP11L1Q9NUJ3 509 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 NRXN1Q9ULB1 1477 aa17.2■□□□□ 0.34
CUX1-214ENST00000550008 SCRN1Q12765 414 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 ANO1Q5XXA6 986 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 OSBP2Q969R2 916 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 ADGRL3Q9HAR2 1447 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 HEG1Q9ULI3 1381 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 CBX1P83916 185 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 ADCY9O60503 1353 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 USP31Q70CQ4 1352 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 CRKLP46109 303 aaKnown RBP17.19■□□□□ 0.34
CUX1-214ENST00000550008 CBX8Q9HC52 389 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 MAST3O60307 1309 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 PDE8BO95263 885 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 CUL4AQ13619 759 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 FAM47AQ5JRC9 791 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 BRAPQ7Z569 592 aa17.19■□□□□ 0.34
CUX1-214ENST00000550008 N4BP3O15049 544 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 UFL1O94874 794 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 HSP90B2PQ58FF3 399 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 RRAGBQ5VZM2 374 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 KIAA1328Q86T90 577 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 SLF2Q8IX21 1173 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 POLR1AO95602 1720 aaPredicted RBP17.18■□□□□ 0.34
CUX1-214ENST00000550008 VWA3AA6NCI4 1184 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 CAVIN2O95810 425 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 NAPAP54920 295 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 STAMQ92783 540 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 IQSEC2Q5JU85 1478 aa17.18■□□□□ 0.34
CUX1-214ENST00000550008 CT47A1Q5JQC4 288 aaPredicted RBP17.18■□□□□ 0.34
CUX1-214ENST00000550008 LLPHQ9BRT6 129 aaKnown RBP17.18■□□□□ 0.34
CUX1-214ENST00000550008 UIMC1Q96RL1 719 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 DENND2AQ9ULE3 1009 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 M0R2C6 588 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 TEX35Q5T0J7 233 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 ZFYVE27Q5T4F4 411 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 ZNF804AQ7Z570 1209 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 TMEM87BQ96K49 555 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 ERBB4Q15303 1308 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 RPS8P62241 208 aaKnown RBP17.17■□□□□ 0.34
CUX1-214ENST00000550008 KIF4BQ2VIQ3 1234 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 PUS7LQ9H0K6 701 aaKnown RBP17.17■□□□□ 0.34
CUX1-214ENST00000550008 OVOS2A0A0J9YW53 1432 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 OVOS2Q6IE36 1432 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 PTPRUQ92729 1446 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 USP17L12C9JPN9 530 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms