RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 LRRFIP2Q9Y608 721 aaKnown RBP11.66□□□□□ -0.54
YBX3-218ENST00000546298 TM4SF4P48230 202 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 INHBEP58166 350 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 DGKZQ13574 1117 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 ATP2B3Q16720 1220 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 SPRYD7Q5W111 196 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 DIEXFQ68CQ4 756 aaKnown RBP11.65□□□□□ -0.54
YBX3-218ENST00000546298 ATG9AQ7Z3C6 839 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 MCOLN1Q9GZU1 580 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 TDRD3Q9H7E2 651 aaKnown RBP11.65□□□□□ -0.54
YBX3-218ENST00000546298 COPRSQ9NQ92 184 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 TMOD2Q9NZR1 351 aa11.65□□□□□ -0.54
YBX3-218ENST00000546298 PAPPA2Q9BXP8 1791 aa11.64□□□□□ -0.55
YBX3-218ENST00000546298 MANSC4A6NHS7 340 aaPredicted RBP11.64□□□□□ -0.55
YBX3-218ENST00000546298 ALDH1A1P00352 501 aa11.64□□□□□ -0.55
YBX3-218ENST00000546298 ZBTB48P10074 688 aaPredicted RBP11.64□□□□□ -0.55
YBX3-218ENST00000546298 NBPF12Q5TAG4 269 aaPredicted RBP11.64□□□□□ -0.55
YBX3-218ENST00000546298 ATF7IPQ6VMQ6 1270 aa11.64□□□□□ -0.55
YBX3-218ENST00000546298 FRAT1Q92837 279 aaPredicted RBP11.64□□□□□ -0.55
YBX3-218ENST00000546298 MEIS3Q99687 375 aa11.64□□□□□ -0.55
YBX3-218ENST00000546298 SIL1Q9H173 461 aa11.64□□□□□ -0.55
YBX3-218ENST00000546298 PSME4Q14997 1843 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 CCDC85CA6NKD9 419 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 TCP10L2B9ZVM9 353 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 SEMA3EO15041 775 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 USP2O75604 605 aaPredicted RBP11.63□□□□□ -0.55
YBX3-218ENST00000546298 HNRNPUQ00839 825 aaKnown RBP eCLIP11.63□□□□□ -0.55
YBX3-218ENST00000546298 MKRN3Q13064 507 aaKnown RBP11.63□□□□□ -0.55
YBX3-218ENST00000546298 HHIPL2Q6UWX4 724 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 ANKRD13AQ8IZ07 590 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 MIER1Q8N108 512 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 HOOK2Q96ED9 719 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 ZDHHC15Q96MV8 337 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 RNF39Q9H2S5 420 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 AKAP2Q9Y2D5 859 aa11.63□□□□□ -0.55
YBX3-218ENST00000546298 SRGAP3O43295 1099 aa11.62□□□□□ -0.55
YBX3-218ENST00000546298 TRIM27P14373 513 aa11.62□□□□□ -0.55
YBX3-218ENST00000546298 MTX1Q13505 466 aa11.62□□□□□ -0.55
YBX3-218ENST00000546298 GRIK5Q16478 980 aa11.62□□□□□ -0.55
YBX3-218ENST00000546298 NOM1Q5C9Z4 860 aaKnown RBP11.62□□□□□ -0.55
YBX3-218ENST00000546298 FKBP1CQ5VVH2 108 aa11.62□□□□□ -0.55
YBX3-218ENST00000546298 ZKSCAN2Q63HK3 967 aa11.62□□□□□ -0.55
YBX3-218ENST00000546298 OTUD7BQ6GQQ9 843 aa11.62□□□□□ -0.55
YBX3-218ENST00000546298 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.62□□□□□ -0.55
YBX3-218ENST00000546298 DENND2AQ9ULE3 1009 aa11.62□□□□□ -0.55
YBX3-218ENST00000546298 AOX1Q06278 1338 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 SPEF2Q9C093 1822 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 ZBTB22O15209 634 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 BCAR3O75815 825 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 TBC1D8O95759 1140 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 GNAI2P04899 355 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 MAP3K9P80192 1104 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 CTU1Q7Z7A3 348 aaKnown RBP11.61□□□□□ -0.55
YBX3-218ENST00000546298 FAM83AQ86UY5 434 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 ZGPATQ8N5A5 531 aaKnown RBP11.61□□□□□ -0.55
YBX3-218ENST00000546298 WNK4Q96J92 1243 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 CFHR5Q9BXR6 569 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 FZD1Q9UP38 647 aa11.61□□□□□ -0.55
YBX3-218ENST00000546298 PA2G4Q9UQ80 394 aaKnown RBP11.61□□□□□ -0.55
YBX3-218ENST00000546298 POLR2AP24928 1970 aaKnown RBP11.61□□□□□ -0.55
YBX3-218ENST00000546298 GPR25O00155 361 aa11.6□□□□□ -0.55
YBX3-218ENST00000546298 LDHBP07195 334 aaKnown RBP11.6□□□□□ -0.55
YBX3-218ENST00000546298 PKN2Q16513 984 aaKnown RBP11.6□□□□□ -0.55
YBX3-218ENST00000546298 APOBEC3HQ6NTF7 200 aaKnown RBP11.6□□□□□ -0.55
YBX3-218ENST00000546298 CLUAP1Q96AJ1 413 aa11.6□□□□□ -0.55
YBX3-218ENST00000546298 CLMNQ96JQ2 1002 aa11.6□□□□□ -0.55
YBX3-218ENST00000546298 TEPSINQ96N21 525 aa11.6□□□□□ -0.55
YBX3-218ENST00000546298 TMEM39BQ9GZU3 492 aa11.6□□□□□ -0.55
YBX3-218ENST00000546298 CSADQ9Y600 493 aa11.6□□□□□ -0.55
YBX3-218ENST00000546298 SALL1Q9NSC2 1324 aa11.6□□□□□ -0.55
YBX3-218ENST00000546298 G3BP1Q13283 466 aaKnown RBP eCLIP11.59□□□□□ -0.55
YBX3-218ENST00000546298 MVPQ14764 893 aaKnown RBP11.59□□□□□ -0.55
YBX3-218ENST00000546298 DCAF15Q66K64 600 aa11.59□□□□□ -0.55
YBX3-218ENST00000546298 CCDC102BQ68D86 513 aa11.59□□□□□ -0.55
YBX3-218ENST00000546298 IFNL1Q8IU54 200 aa11.59□□□□□ -0.55
YBX3-218ENST00000546298 SLF2Q8IX21 1173 aa11.59□□□□□ -0.55
YBX3-218ENST00000546298 ZNF296Q8WUU4 475 aaPredicted RBP11.59□□□□□ -0.55
YBX3-218ENST00000546298 FKTNO75072 461 aa11.58□□□□□ -0.56
YBX3-218ENST00000546298 PHKA1P46020 1223 aa11.58□□□□□ -0.56
YBX3-218ENST00000546298 CACNB3P54284 484 aa11.58□□□□□ -0.56
YBX3-218ENST00000546298 TFCP2Q12800 502 aa11.58□□□□□ -0.56
YBX3-218ENST00000546298 SPTY2D1Q68D10 685 aaPredicted RBP11.58□□□□□ -0.56
YBX3-218ENST00000546298 ELP3Q9H9T3 547 aa11.58□□□□□ -0.56
YBX3-218ENST00000546298 SSC5DA1L4H1 1573 aa11.58□□□□□ -0.56
YBX3-218ENST00000546298 A0A1B0GUL7 405 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 PRDX5P30044 214 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 TIMM10P62072 90 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 GORABQ5T7V8 394 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.57□□□□□ -0.56
YBX3-218ENST00000546298 FTSJ3Q8IY81 847 aaKnown RBP11.57□□□□□ -0.56
YBX3-218ENST00000546298 TMEM57Q8N5G2 664 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.57□□□□□ -0.56
YBX3-218ENST00000546298 FAM151AQ8WW52 585 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 OPTNQ96CV9 577 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 XAGE2Q96GT9 111 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 NEUROD6Q96NK8 337 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 DAGLAQ9Y4D2 1042 aa11.57□□□□□ -0.56
YBX3-218ENST00000546298 PDS5AQ29RF7 1337 aaKnown RBP11.57□□□□□ -0.56
YBX3-218ENST00000546298 TESPA1A2RU30 521 aaPredicted RBP11.56□□□□□ -0.56
YBX3-218ENST00000546298 WDHD1O75717 1129 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms