RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NT5C2P49902 561 aa11.56□□□□□ -0.56
SS18-205ENST00000542420 SLC10A5Q5PT55 438 aa11.56□□□□□ -0.56
SS18-205ENST00000542420 SLC9C2Q5TAH2 1124 aa11.56□□□□□ -0.56
SS18-205ENST00000542420 USP25Q9UHP3 1055 aa11.56□□□□□ -0.56
SS18-205ENST00000542420 ZNF804BA4D1E1 1349 aa11.56□□□□□ -0.56
SS18-205ENST00000542420 DUOX1Q9NRD9 1551 aa11.56□□□□□ -0.56
SS18-205ENST00000542420 SBF2Q86WG5 1849 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 PATL2C9JE40 543 aaKnown RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 ITPK1Q13572 414 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 SYNE4Q8N205 404 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 STRBPQ96SI9 672 aaKnown RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 PIH1D3Q9NQM4 214 aaKnown RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 LAMB1P07942 1786 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 ZNF532Q9HCE3 1301 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 STK36Q9NRP7 1315 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 SEMA3EO15041 775 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 ADD1P35611 737 aaKnown RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 PHKA1P46020 1223 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 FOXD4L6Q3SYB3 417 aaPredicted RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 CPLX2Q6PUV4 134 aaKnown RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 FOXD4L3Q6VB84 417 aaPredicted RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 SGMS1Q86VZ5 419 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 FAM200AQ8TCP9 573 aa11.55□□□□□ -0.56
SS18-205ENST00000542420 ANGEL1Q9UNK9 670 aaKnown RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 CCDC9Q9Y3X0 531 aaKnown RBP11.55□□□□□ -0.56
SS18-205ENST00000542420 LIFRP42702 1097 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 UBE4AQ14139 1066 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 CACNA1SQ13698 1873 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 A0A1W2PQ27 194 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 A0A1W2PQ64 194 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 A0A1W2PQD8 194 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 SH2B2O14492 632 aaPredicted RBP11.54□□□□□ -0.56
SS18-205ENST00000542420 KDM4AO75164 1064 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 YEATS4O95619 227 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 ANTXR2P58335 489 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 PDE4CQ08493 712 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 TTLL5Q6EMB2 1281 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 FERMT3Q86UX7 667 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 AIDAQ96BJ3 306 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 KRT23Q9C075 422 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 NYXQ9GZU5 481 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 GNL3LQ9NVN8 582 aaKnown RBP11.54□□□□□ -0.56
SS18-205ENST00000542420 RTEL1Q9NZ71 1219 aa11.54□□□□□ -0.56
SS18-205ENST00000542420 NIP7Q9Y221 180 aaKnown RBP eCLIP11.54□□□□□ -0.56
SS18-205ENST00000542420 PCP11498 1178 aaKnown RBP11.53□□□□□ -0.56
SS18-205ENST00000542420 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.53□□□□□ -0.56
SS18-205ENST00000542420 CCDC85AQ96PX6 553 aaPredicted RBP11.53□□□□□ -0.56
SS18-205ENST00000542420 NACAP1Q9BZK3 213 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 TNMDQ9H2S6 317 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 HPS5Q9UPZ3 1129 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 MYH6P13533 1939 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 KLF18A0A0U1RQI7 1052 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 PPP2R5BQ15173 497 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 SLFNL1Q499Z3 407 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 LRRC2Q9BYS8 371 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 POLR3EQ9NVU0 708 aa11.53□□□□□ -0.56
SS18-205ENST00000542420 BSDC1Q9NW68 430 aaPredicted RBP11.53□□□□□ -0.56
SS18-205ENST00000542420 IDH1O75874 414 aaKnown RBP11.52□□□□□ -0.57
SS18-205ENST00000542420 ADAMTS2O95450 1211 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 RASGRF1Q13972 1273 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 TMTC2Q8N394 836 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 FBXO18Q8NFZ0 1043 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 KCNG4Q8TDN1 519 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 STAG1Q8WVM7 1258 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 PGBD1Q96JS3 809 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 NBPF3Q9H094 633 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 RNF41Q9H4P4 317 aaPredicted RBP11.52□□□□□ -0.57
SS18-205ENST00000542420 ANAPC4Q9UJX5 808 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 GOLGA8BA8MQT2 603 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 FDPSP14324 419 aaKnown RBP11.52□□□□□ -0.57
SS18-205ENST00000542420 LIG1P18858 919 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 FNBP4Q8N3X1 1017 aaPredicted RBP11.52□□□□□ -0.57
SS18-205ENST00000542420 DDX11Q96FC9 970 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 C8orf76Q96K31 380 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 DACT1Q9NYF0 836 aa11.52□□□□□ -0.57
SS18-205ENST00000542420 CPLX1O14810 134 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 OFD1O75665 1012 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 HCLS1P14317 486 aaPredicted RBP11.51□□□□□ -0.57
SS18-205ENST00000542420 TYRO3Q06418 890 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 GIMAP6Q6P9H5 292 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 PI16Q6UXB8 463 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.51□□□□□ -0.57
SS18-205ENST00000542420 ANKRD18AQ8IVF6 992 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 IFNL3Q8IZI9 196 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 RNF214Q8ND24 703 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 BICD2Q8TD16 824 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 WASF1Q92558 559 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 WWC3Q9ULE0 1092 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 SPATA31A6Q5VVP1 1343 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 GOLGA6L6A8MZA4 724 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 CCT2P78371 535 aaKnown RBP11.51□□□□□ -0.57
SS18-205ENST00000542420 CHRNDQ07001 517 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 ADALQ6DHV7 355 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 CCDC73Q6ZRK6 1079 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 TDRD7Q8NHU6 1098 aaKnown RBP11.51□□□□□ -0.57
SS18-205ENST00000542420 NAPBQ9H115 298 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 ORC3Q9UBD5 711 aaPredicted RBP11.51□□□□□ -0.57
SS18-205ENST00000542420 NARFQ9UHQ1 456 aa11.51□□□□□ -0.57
SS18-205ENST00000542420 MORC2Q9Y6X9 1032 aaPredicted RBP11.51□□□□□ -0.57
SS18-205ENST00000542420 A0A0G2JLW4 131 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms