RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 TCP10L2B9ZVM9 353 aa19.45■□□□□ 0.7
RTN3-211ENST00000542238 FRAT2O75474 233 aaPredicted RBP19.45■□□□□ 0.7
RTN3-211ENST00000542238 CRKP46108 304 aa19.45■□□□□ 0.7
RTN3-211ENST00000542238 GCC1Q96CN9 775 aa19.45■□□□□ 0.7
RTN3-211ENST00000542238 SUCLG2Q96I99 432 aa19.45■□□□□ 0.7
RTN3-211ENST00000542238 RBBP6Q7Z6E9 1792 aaKnown RBP19.44■□□□□ 0.7
RTN3-211ENST00000542238 KIAA0100Q14667 2235 aaKnown RBP19.44■□□□□ 0.7
RTN3-211ENST00000542238 MAP3K9P80192 1104 aa19.44■□□□□ 0.7
RTN3-211ENST00000542238 ARHGEF6Q15052 776 aa19.44■□□□□ 0.7
RTN3-211ENST00000542238 CAVIN4Q5BKX8 364 aa19.44■□□□□ 0.7
RTN3-211ENST00000542238 TBC1D22AQ8WUA7 517 aa19.44■□□□□ 0.7
RTN3-211ENST00000542238 TEPSINQ96N21 525 aa19.44■□□□□ 0.7
RTN3-211ENST00000542238 TMEM39BQ9GZU3 492 aa19.44■□□□□ 0.7
RTN3-211ENST00000542238 RIPOR2Q9Y4F9 1068 aa19.44■□□□□ 0.7
RTN3-211ENST00000542238 CSADQ9Y600 493 aa19.44■□□□□ 0.7
RTN3-211ENST00000542238 NBPF7P0C2Y1 421 aaPredicted RBP19.43■□□□□ 0.7
RTN3-211ENST00000542238 GTF2A2P52657 109 aa19.43■□□□□ 0.7
RTN3-211ENST00000542238 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.43■□□□□ 0.7
RTN3-211ENST00000542238 MS4A4AQ96JQ5 239 aa19.43■□□□□ 0.7
RTN3-211ENST00000542238 POTEFA5A3E0 1075 aa19.42■□□□□ 0.7
RTN3-211ENST00000542238 WDHD1O75717 1129 aaPredicted RBP19.42■□□□□ 0.7
RTN3-211ENST00000542238 HDLBPQ00341 1268 aaKnown RBP19.42■□□□□ 0.7
RTN3-211ENST00000542238 CHAF1AQ13111 956 aaPredicted RBP19.42■□□□□ 0.7
RTN3-211ENST00000542238 VGLL4Q14135 290 aa19.42■□□□□ 0.7
RTN3-211ENST00000542238 TAF1CQ15572 869 aaPredicted RBP19.42■□□□□ 0.7
RTN3-211ENST00000542238 METTL24Q5JXM2 366 aa19.42■□□□□ 0.7
RTN3-211ENST00000542238 FBXO33Q7Z6M2 555 aa19.42■□□□□ 0.7
RTN3-211ENST00000542238 KAZALD1Q96I82 304 aa19.42■□□□□ 0.7
RTN3-211ENST00000542238 ZFYVE28Q9HCC9 887 aa19.42■□□□□ 0.7
RTN3-211ENST00000542238 IQSEC3Q9UPP2 1182 aaPredicted RBP19.42■□□□□ 0.7
RTN3-211ENST00000542238 CCL15-CCL14A0A0B4J2E2 113 aa19.41■□□□□ 0.7
RTN3-211ENST00000542238 CCL15Q16663 113 aa19.41■□□□□ 0.7
RTN3-211ENST00000542238 CDAN1Q8IWY9 1227 aa19.41■□□□□ 0.7
RTN3-211ENST00000542238 TEKT1Q969V4 418 aa19.41■□□□□ 0.7
RTN3-211ENST00000542238 ARMC5Q96C12 935 aa19.41■□□□□ 0.7
RTN3-211ENST00000542238 OTUD5Q96G74 571 aa19.41■□□□□ 0.7
RTN3-211ENST00000542238 BICC1Q9H694 974 aaKnown RBP19.41■□□□□ 0.7
RTN3-211ENST00000542238 TMOD2Q9NZR1 351 aa19.41■□□□□ 0.7
RTN3-211ENST00000542238 UTYO14607 1347 aa19.41■□□□□ 0.7
RTN3-211ENST00000542238 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.4■□□□□ 0.7
RTN3-211ENST00000542238 CNKSR2Q8WXI2 1034 aa19.4■□□□□ 0.7
RTN3-211ENST00000542238 BRI3BPQ8WY22 251 aa19.4■□□□□ 0.7
RTN3-211ENST00000542238 HOOK2Q96ED9 719 aa19.4■□□□□ 0.7
RTN3-211ENST00000542238 TMEM106CQ9BVX2 250 aa19.4■□□□□ 0.7
RTN3-211ENST00000542238 HTTP42858 3142 aa19.39■□□□□ 0.69
RTN3-211ENST00000542238 PDE8BO95263 885 aa19.39■□□□□ 0.69
RTN3-211ENST00000542238 RABL6Q3YEC7 729 aaPredicted RBP19.39■□□□□ 0.69
RTN3-211ENST00000542238 LRRC24Q50LG9 513 aa19.39■□□□□ 0.69
RTN3-211ENST00000542238 FAM9BQ8IZU0 186 aa19.39■□□□□ 0.69
RTN3-211ENST00000542238 MAST3O60307 1309 aa19.38■□□□□ 0.69
RTN3-211ENST00000542238 GRIK5Q16478 980 aa19.38■□□□□ 0.69
RTN3-211ENST00000542238 NBPF11Q86T75 865 aa19.38■□□□□ 0.69
RTN3-211ENST00000542238 MRIQ9BWK5 157 aa19.38■□□□□ 0.69
RTN3-211ENST00000542238 SPDYE5A6NIY4 337 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 CETPP11597 493 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 CACNB3P54284 484 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 FAM83AQ86UY5 434 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 ERO1BQ86YB8 467 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 ANKRD44Q8N8A2 993 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 ZDHHC15Q96MV8 337 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 SUGT1Q9Y2Z0 365 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 MYH13Q9UKX3 1938 aa19.37■□□□□ 0.69
RTN3-211ENST00000542238 IFIT1P09914 478 aaKnown RBP19.36■□□□□ 0.69
RTN3-211ENST00000542238 EN2P19622 333 aaPredicted RBP19.36■□□□□ 0.69
RTN3-211ENST00000542238 BCAMP50895 628 aa19.36■□□□□ 0.69
RTN3-211ENST00000542238 KIF22Q14807 665 aa19.36■□□□□ 0.69
RTN3-211ENST00000542238 SLC9C1Q4G0N8 1177 aa19.36■□□□□ 0.69
RTN3-211ENST00000542238 FKBP1CQ5VVH2 108 aa19.36■□□□□ 0.69
RTN3-211ENST00000542238 FAM43AQ8N2R8 423 aa19.36■□□□□ 0.69
RTN3-211ENST00000542238 VGLL2Q8N8G2 317 aa19.36■□□□□ 0.69
RTN3-211ENST00000542238 WRNIP1Q96S55 665 aa19.36■□□□□ 0.69
RTN3-211ENST00000542238 PTPRCP08575 1304 aa19.35■□□□□ 0.69
RTN3-211ENST00000542238 CAP1Q01518 475 aa19.35■□□□□ 0.69
RTN3-211ENST00000542238 SNAPC2Q13487 334 aa19.35■□□□□ 0.69
RTN3-211ENST00000542238 PUM3Q15397 648 aaKnown RBP19.35■□□□□ 0.69
RTN3-211ENST00000542238 DCAF15Q66K64 600 aa19.35■□□□□ 0.69
RTN3-211ENST00000542238 ZNF333Q96JL9 665 aa19.35■□□□□ 0.69
RTN3-211ENST00000542238 ZCCHC17Q9NP64 241 aaKnown RBP19.35■□□□□ 0.69
RTN3-211ENST00000542238 AK9Q5TCS8 1911 aa19.35■□□□□ 0.69
RTN3-211ENST00000542238 KIF16BQ96L93 1317 aa19.34■□□□□ 0.69
RTN3-211ENST00000542238 CENPFP49454 3210 aa19.34■□□□□ 0.69
RTN3-211ENST00000542238 HHIPL2Q6UWX4 724 aa19.34■□□□□ 0.69
RTN3-211ENST00000542238 MRPL50Q8N5N7 158 aaKnown RBP19.34■□□□□ 0.69
RTN3-211ENST00000542238 KLHDC4Q8TBB5 520 aa19.34■□□□□ 0.69
RTN3-211ENST00000542238 ZKSCAN4Q969J2 545 aaPredicted RBP19.34■□□□□ 0.69
RTN3-211ENST00000542238 PTCH2Q9Y6C5 1203 aa19.34■□□□□ 0.69
RTN3-211ENST00000542238 SNCAIPQ9Y6H5 919 aa19.34■□□□□ 0.69
RTN3-211ENST00000542238 TLR2O60603 784 aa19.33■□□□□ 0.68
RTN3-211ENST00000542238 SLC4A8Q2Y0W8 1093 aa19.33■□□□□ 0.68
RTN3-211ENST00000542238 APOBEC3HQ6NTF7 200 aaKnown RBP19.33■□□□□ 0.68
RTN3-211ENST00000542238 IRF6O14896 467 aa19.32■□□□□ 0.68
RTN3-211ENST00000542238 ZEB1P37275 1124 aaPredicted RBP19.32■□□□□ 0.68
RTN3-211ENST00000542238 PPIL2Q13356 520 aa19.32■□□□□ 0.68
RTN3-211ENST00000542238 HABP4Q5JVS0 413 aaKnown RBP19.32■□□□□ 0.68
RTN3-211ENST00000542238 WDR66Q8TBY9 1149 aa19.32■□□□□ 0.68
RTN3-211ENST00000542238 ZNF341Q9BYN7 854 aa19.32■□□□□ 0.68
RTN3-211ENST00000542238 RPAP1Q9BWH6 1393 aaPredicted RBP19.32■□□□□ 0.68
RTN3-211ENST00000542238 BTBD19C9JJ37 291 aa19.31■□□□□ 0.68
RTN3-211ENST00000542238 GNRH1P01148 92 aa19.31■□□□□ 0.68
RTN3-211ENST00000542238 SLC5A1P13866 664 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 143 ms