RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CRKP46108 304 aa17.74■□□□□ 0.43
SNHG1-213ENST00000540725 INHBEP58166 350 aa17.74■□□□□ 0.43
SNHG1-213ENST00000540725 CHAF1AQ13111 956 aaPredicted RBP17.74■□□□□ 0.43
SNHG1-213ENST00000540725 CAVIN4Q5BKX8 364 aa17.74■□□□□ 0.43
SNHG1-213ENST00000540725 HPS5Q9UPZ3 1129 aa17.74■□□□□ 0.43
SNHG1-213ENST00000540725 FKTNO75072 461 aa17.73■□□□□ 0.43
SNHG1-213ENST00000540725 FRAT2O75474 233 aaPredicted RBP17.73■□□□□ 0.43
SNHG1-213ENST00000540725 GRIK5Q16478 980 aa17.73■□□□□ 0.43
SNHG1-213ENST00000540725 ALDH1L2Q3SY69 923 aa17.73■□□□□ 0.43
SNHG1-213ENST00000540725 IFNL1Q8IU54 200 aa17.72■□□□□ 0.43
SNHG1-213ENST00000540725 ANKRD13AQ8IZ07 590 aa17.72■□□□□ 0.43
SNHG1-213ENST00000540725 TBC1D22AQ8WUA7 517 aa17.72■□□□□ 0.43
SNHG1-213ENST00000540725 CDCA7LQ96GN5 454 aa17.72■□□□□ 0.43
SNHG1-213ENST00000540725 SMC4Q9NTJ3 1288 aa17.72■□□□□ 0.43
SNHG1-213ENST00000540725 TCP10L2B9ZVM9 353 aa17.71■□□□□ 0.43
SNHG1-213ENST00000540725 IGF2BP3O00425 579 aaKnown RBP eCLIP17.71■□□□□ 0.43
SNHG1-213ENST00000540725 BCAMP50895 628 aa17.71■□□□□ 0.43
SNHG1-213ENST00000540725 CDAN1Q8IWY9 1227 aa17.71■□□□□ 0.43
SNHG1-213ENST00000540725 TEPSINQ96N21 525 aa17.71■□□□□ 0.43
SNHG1-213ENST00000540725 KIF16BQ96L93 1317 aa17.7■□□□□ 0.42
SNHG1-213ENST00000540725 GJA5P36382 358 aa17.7■□□□□ 0.42
SNHG1-213ENST00000540725 TNNI2P48788 182 aa17.7■□□□□ 0.42
SNHG1-213ENST00000540725 HDLBPQ00341 1268 aaKnown RBP17.7■□□□□ 0.42
SNHG1-213ENST00000540725 PUM3Q15397 648 aaKnown RBP17.7■□□□□ 0.42
SNHG1-213ENST00000540725 FBXO46Q6PJ61 603 aaPredicted RBP17.7■□□□□ 0.42
SNHG1-213ENST00000540725 TMEM39BQ9GZU3 492 aa17.7■□□□□ 0.42
SNHG1-213ENST00000540725 EYA2O00167 538 aa17.69■□□□□ 0.42
SNHG1-213ENST00000540725 IFIT1P09914 478 aaKnown RBP17.69■□□□□ 0.42
SNHG1-213ENST00000540725 FGFR2P21802 821 aa17.69■□□□□ 0.42
SNHG1-213ENST00000540725 RFX5P48382 616 aaPredicted RBP17.69■□□□□ 0.42
SNHG1-213ENST00000540725 TEKT1Q969V4 418 aa17.69■□□□□ 0.42
SNHG1-213ENST00000540725 ELP3Q9H9T3 547 aa17.69■□□□□ 0.42
SNHG1-213ENST00000540725 KIAA0100Q14667 2235 aaKnown RBP17.68■□□□□ 0.42
SNHG1-213ENST00000540725 TRMT2AQ8IZ69 625 aaKnown RBP17.68■□□□□ 0.42
SNHG1-213ENST00000540725 AK9Q5TCS8 1911 aa17.68■□□□□ 0.42
SNHG1-213ENST00000540725 HTTP42858 3142 aa17.68■□□□□ 0.42
SNHG1-213ENST00000540725 SLC5A1P13866 664 aa17.67■□□□□ 0.42
SNHG1-213ENST00000540725 OTUD7BQ6GQQ9 843 aa17.67■□□□□ 0.42
SNHG1-213ENST00000540725 OPTNQ96CV9 577 aa17.67■□□□□ 0.42
SNHG1-213ENST00000540725 MAST3O60307 1309 aa17.67■□□□□ 0.42
SNHG1-213ENST00000540725 UBTFL1P0CB47 393 aaPredicted RBP17.66■□□□□ 0.42
SNHG1-213ENST00000540725 CACNB3P54284 484 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.66■□□□□ 0.42
SNHG1-213ENST00000540725 ZDHHC15Q96MV8 337 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 TMOD2Q9NZR1 351 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 SUGT1Q9Y2Z0 365 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 TESPA1A2RU30 521 aaPredicted RBP17.66■□□□□ 0.42
SNHG1-213ENST00000540725 CT47B1P0C2W7 299 aaPredicted RBP17.66■□□□□ 0.42
SNHG1-213ENST00000540725 CRHR2Q13324 411 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 ATG9AQ7Z3C6 839 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.66■□□□□ 0.42
SNHG1-213ENST00000540725 LPIN2Q92539 896 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 PTPN18Q99952 460 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 MRIQ9BWK5 157 aa17.66■□□□□ 0.42
SNHG1-213ENST00000540725 MAP3K9P80192 1104 aa17.65■□□□□ 0.42
SNHG1-213ENST00000540725 VGLL4Q14135 290 aa17.65■□□□□ 0.42
SNHG1-213ENST00000540725 CNKSR2Q8WXI2 1034 aa17.65■□□□□ 0.42
SNHG1-213ENST00000540725 SIL1Q9H173 461 aa17.65■□□□□ 0.42
SNHG1-213ENST00000540725 NOB1Q9ULX3 412 aaKnown RBP17.65■□□□□ 0.42
SNHG1-213ENST00000540725 TRIM17Q9Y577 477 aa17.65■□□□□ 0.42
SNHG1-213ENST00000540725 CSADQ9Y600 493 aa17.65■□□□□ 0.42
SNHG1-213ENST00000540725 FKBP1CQ5VVH2 108 aa17.64■□□□□ 0.41
SNHG1-213ENST00000540725 APOBEC3HQ6NTF7 200 aaKnown RBP17.64■□□□□ 0.41
SNHG1-213ENST00000540725 HHIPL2Q6UWX4 724 aa17.64■□□□□ 0.41
SNHG1-213ENST00000540725 OTOP1Q7RTM1 612 aa17.64■□□□□ 0.41
SNHG1-213ENST00000540725 FAM83AQ86UY5 434 aa17.64■□□□□ 0.41
SNHG1-213ENST00000540725 WDR66Q8TBY9 1149 aa17.64■□□□□ 0.41
SNHG1-213ENST00000540725 MS4A4AQ96JQ5 239 aa17.64■□□□□ 0.41
SNHG1-213ENST00000540725 FBXO3Q9UK99 471 aa17.64■□□□□ 0.41
SNHG1-213ENST00000540725 CIAO1O76071 339 aa17.63■□□□□ 0.41
SNHG1-213ENST00000540725 ATP2B3Q16720 1220 aa17.63■□□□□ 0.41
SNHG1-213ENST00000540725 BRI3BPQ8WY22 251 aa17.63■□□□□ 0.41
SNHG1-213ENST00000540725 ERO1AQ96HE7 468 aa17.63■□□□□ 0.41
SNHG1-213ENST00000540725 API5Q9BZZ5 524 aaKnown RBP17.63■□□□□ 0.41
SNHG1-213ENST00000540725 MYH2Q9UKX2 1941 aa17.63■□□□□ 0.41
SNHG1-213ENST00000540725 CENPFP49454 3210 aa17.62■□□□□ 0.41
SNHG1-213ENST00000540725 CD99L2Q8TCZ2 262 aa17.62■□□□□ 0.41
SNHG1-213ENST00000540725 OTUD5Q96G74 571 aa17.62■□□□□ 0.41
SNHG1-213ENST00000540725 CEP126Q9P2H0 1117 aa17.62■□□□□ 0.41
SNHG1-213ENST00000540725 LRRFIP2Q9Y608 721 aaKnown RBP17.62■□□□□ 0.41
SNHG1-213ENST00000540725 RPAP1Q9BWH6 1393 aaPredicted RBP17.62■□□□□ 0.41
SNHG1-213ENST00000540725 CCL15-CCL14A0A0B4J2E2 113 aa17.61■□□□□ 0.41
SNHG1-213ENST00000540725 GTF2A2P52657 109 aa17.61■□□□□ 0.41
SNHG1-213ENST00000540725 CCL15Q16663 113 aa17.61■□□□□ 0.41
SNHG1-213ENST00000540725 HOOK2Q96ED9 719 aa17.61■□□□□ 0.41
SNHG1-213ENST00000540725 WRNIP1Q96S55 665 aa17.61■□□□□ 0.41
SNHG1-213ENST00000540725 HDAC5Q9UQL6 1122 aa17.61■□□□□ 0.41
SNHG1-213ENST00000540725 SNCAIPQ9Y6H5 919 aa17.61■□□□□ 0.41
SNHG1-213ENST00000540725 RBBP6Q7Z6E9 1792 aaKnown RBP17.6■□□□□ 0.41
SNHG1-213ENST00000540725 SPDYE5A6NIY4 337 aa17.6■□□□□ 0.41
SNHG1-213ENST00000540725 SLC34A2O95436 690 aa17.6■□□□□ 0.41
SNHG1-213ENST00000540725 SP3Q02447 781 aa17.6■□□□□ 0.41
SNHG1-213ENST00000540725 TAF1CQ15572 869 aaPredicted RBP17.6■□□□□ 0.41
SNHG1-213ENST00000540725 PA2G4Q9UQ80 394 aaKnown RBP17.6■□□□□ 0.41
SNHG1-213ENST00000540725 DAGLAQ9Y4D2 1042 aa17.6■□□□□ 0.41
SNHG1-213ENST00000540725 PRDX5P30044 214 aa17.59■□□□□ 0.41
SNHG1-213ENST00000540725 IL15P40933 162 aaPredicted RBP17.59■□□□□ 0.41
SNHG1-213ENST00000540725 DIXDC1Q155Q3 683 aa17.59■□□□□ 0.41
SNHG1-213ENST00000540725 DCAF15Q66K64 600 aa17.59■□□□□ 0.41
SNHG1-213ENST00000540725 ERO1BQ86YB8 467 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms