RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 CARNS1A5YM72 827 aa6.63□□□□□ -1.35
USP48-215ENST00000534705 NPR3P17342 541 aa6.63□□□□□ -1.35
USP48-215ENST00000534705 SOX4Q06945 474 aaPredicted RBP6.63□□□□□ -1.35
USP48-215ENST00000534705 SF3B2Q13435 895 aaKnown RBP6.63□□□□□ -1.35
USP48-215ENST00000534705 KRTAP19-4Q3LI73 84 aa6.63□□□□□ -1.35
USP48-215ENST00000534705 C2CD4AQ8NCU7 369 aaPredicted RBP6.63□□□□□ -1.35
USP48-215ENST00000534705 GTF3C2Q8WUA4 911 aaPredicted RBP6.63□□□□□ -1.35
USP48-215ENST00000534705 CNTN3Q9P232 1028 aa6.63□□□□□ -1.35
USP48-215ENST00000534705 FAM170BA6NMN3 283 aa6.62□□□□□ -1.35
USP48-215ENST00000534705 DRD2P14416 443 aa6.62□□□□□ -1.35
USP48-215ENST00000534705 PCSK2P16519 638 aa6.62□□□□□ -1.35
USP48-215ENST00000534705 ZNF124Q15973 351 aa6.62□□□□□ -1.35
USP48-215ENST00000534705 HGSNATQ68CP4 663 aa6.62□□□□□ -1.35
USP48-215ENST00000534705 SPOCD1Q6ZMY3 1216 aa6.62□□□□□ -1.35
USP48-215ENST00000534705 KRTAP4-11Q9BYQ6 195 aa6.62□□□□□ -1.35
USP48-215ENST00000534705 LRRC4CQ9HCJ2 640 aa6.62□□□□□ -1.35
USP48-215ENST00000534705 PLCL1Q15111 1095 aa6.61□□□□□ -1.35
USP48-215ENST00000534705 ATG4DQ86TL0 474 aaPredicted RBP6.61□□□□□ -1.35
USP48-215ENST00000534705 KSR1Q8IVT5 923 aa6.61□□□□□ -1.35
USP48-215ENST00000534705 C1orf127Q8N9H9 656 aa6.61□□□□□ -1.35
USP48-215ENST00000534705 TTC16Q8NEE8 873 aa6.61□□□□□ -1.35
USP48-215ENST00000534705 GATA6Q92908 595 aa6.61□□□□□ -1.35
USP48-215ENST00000534705 NXPE3Q969Y0 559 aa6.61□□□□□ -1.35
USP48-215ENST00000534705 NUDT16Q96DE0 195 aaKnown RBP6.61□□□□□ -1.35
USP48-215ENST00000534705 SLC38A3Q99624 504 aa6.61□□□□□ -1.35
USP48-215ENST00000534705 BRD1O95696 1058 aa6.6□□□□□ -1.35
USP48-215ENST00000534705 ACPPP15309 386 aa6.6□□□□□ -1.35
USP48-215ENST00000534705 ZNF792Q3KQV3 632 aa6.6□□□□□ -1.35
USP48-215ENST00000534705 HP1BP3Q5SSJ5 553 aaPredicted RBP6.6□□□□□ -1.35
USP48-215ENST00000534705 ALKBH2Q6NS38 261 aa6.6□□□□□ -1.35
USP48-215ENST00000534705 VN1R5Q7Z5H4 357 aa6.6□□□□□ -1.35
USP48-215ENST00000534705 TXNDC2Q86VQ3 553 aa6.6□□□□□ -1.35
USP48-215ENST00000534705 BCL7CQ8WUZ0 217 aaPredicted RBP6.6□□□□□ -1.35
USP48-215ENST00000534705 TMEM40Q8WWA1 233 aa6.6□□□□□ -1.35
USP48-215ENST00000534705 MISP3Q96FF7 219 aa6.6□□□□□ -1.35
USP48-215ENST00000534705 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.6□□□□□ -1.35
USP48-215ENST00000534705 CARMIL2Q6F5E8 1435 aa6.59□□□□□ -1.35
USP48-215ENST00000534705 ZBTB39O15060 712 aa6.59□□□□□ -1.35
USP48-215ENST00000534705 FAM13AO94988 1023 aa6.59□□□□□ -1.35
USP48-215ENST00000534705 DLGAP3O95886 979 aa6.59□□□□□ -1.35
USP48-215ENST00000534705 OSMRQ99650 979 aa6.59□□□□□ -1.35
USP48-215ENST00000534705 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.58□□□□□ -1.36
USP48-215ENST00000534705 TRPA1O75762 1119 aa6.58□□□□□ -1.36
USP48-215ENST00000534705 MPSTP25325 297 aa6.58□□□□□ -1.36
USP48-215ENST00000534705 FKBP4Q02790 459 aaKnown RBP eCLIP6.58□□□□□ -1.36
USP48-215ENST00000534705 NOM1Q5C9Z4 860 aaKnown RBP6.58□□□□□ -1.36
USP48-215ENST00000534705 ZNF765Q7L2R6 523 aa6.58□□□□□ -1.36
USP48-215ENST00000534705 HHIPQ96QV1 700 aa6.58□□□□□ -1.36
USP48-215ENST00000534705 TRAIPQ9BWF2 469 aa6.58□□□□□ -1.36
USP48-215ENST00000534705 ZFYVE1Q9HBF4 777 aa6.58□□□□□ -1.36
USP48-215ENST00000534705 GNEQ9Y223 722 aaKnown RBP6.58□□□□□ -1.36
USP48-215ENST00000534705 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.58□□□□□ -1.36
USP48-215ENST00000534705 ICMTO60725 284 aa6.57□□□□□ -1.36
USP48-215ENST00000534705 NFICP08651 508 aa6.57□□□□□ -1.36
USP48-215ENST00000534705 ESRRAP11474 423 aaPredicted RBP6.57□□□□□ -1.36
USP48-215ENST00000534705 ADH5P11766 374 aa6.57□□□□□ -1.36
USP48-215ENST00000534705 EIF1AXP47813 144 aaKnown RBP6.57□□□□□ -1.36
USP48-215ENST00000534705 GSTM4Q03013 218 aa6.57□□□□□ -1.36
USP48-215ENST00000534705 BHLHE22Q8NFJ8 381 aaPredicted RBP6.57□□□□□ -1.36
USP48-215ENST00000534705 CCER1Q8TC90 406 aaPredicted RBP6.57□□□□□ -1.36
USP48-215ENST00000534705 FAM168AQ92567 244 aa6.57□□□□□ -1.36
USP48-215ENST00000534705 EDN3P14138 238 aa6.56□□□□□ -1.36
USP48-215ENST00000534705 MZF1P28698 734 aaPredicted RBP6.56□□□□□ -1.36
USP48-215ENST00000534705 OGFOD3Q6PK18 319 aa6.56□□□□□ -1.36
USP48-215ENST00000534705 PATL2C9JE40 543 aaKnown RBP6.55□□□□□ -1.36
USP48-215ENST00000534705 ABL1P00519 1130 aa6.55□□□□□ -1.36
USP48-215ENST00000534705 KCNA1Q09470 495 aa6.55□□□□□ -1.36
USP48-215ENST00000534705 ZNF211Q13398 564 aaPredicted RBP6.55□□□□□ -1.36
USP48-215ENST00000534705 CYP27C1Q4G0S4 372 aa6.55□□□□□ -1.36
USP48-215ENST00000534705 FAM84AQ96KN4 292 aa6.55□□□□□ -1.36
USP48-215ENST00000534705 ZKSCAN3Q9BRR0 538 aa6.55□□□□□ -1.36
USP48-215ENST00000534705 RC3H2Q9HBD1 1191 aaKnown RBP6.55□□□□□ -1.36
USP48-215ENST00000534705 ACTL7BQ9Y614 415 aa6.55□□□□□ -1.36
USP48-215ENST00000534705 H3BRB1 525 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 PDGFAP04085 211 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 RAB6AP20340 208 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 FUT4P22083 530 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 USP5P45974 858 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 SERPINB4P48594 390 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 MTMR3Q13615 1198 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 ZNF574Q6ZN55 896 aaPredicted RBP6.54□□□□□ -1.36
USP48-215ENST00000534705 DYMQ7RTS9 669 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 SPRED2Q7Z698 418 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 GLIS3Q8NEA6 775 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 ASAP3Q8TDY4 903 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 EDEM1Q92611 657 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 BHLHE41Q9C0J9 482 aaPredicted RBP6.54□□□□□ -1.36
USP48-215ENST00000534705 CHRDQ9H2X0 955 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 SEMA6CQ9H3T2 930 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 TUT1Q9H6E5 874 aaKnown RBP6.54□□□□□ -1.36
USP48-215ENST00000534705 ACSS3Q9H6R3 686 aa6.54□□□□□ -1.36
USP48-215ENST00000534705 CYP11A1P05108 521 aa6.53□□□□□ -1.36
USP48-215ENST00000534705 C8orf34Q49A92 452 aa6.53□□□□□ -1.36
USP48-215ENST00000534705 ATCAYQ86WG3 371 aa6.53□□□□□ -1.36
USP48-215ENST00000534705 GLYCTKQ8IVS8 523 aa6.53□□□□□ -1.36
USP48-215ENST00000534705 KRTAP4-5Q9BYR2 181 aa6.53□□□□□ -1.36
USP48-215ENST00000534705 RAD18Q9NS91 495 aa6.53□□□□□ -1.36
USP48-215ENST00000534705 FZD6O60353 706 aa6.52□□□□□ -1.37
USP48-215ENST00000534705 DNM1Q05193 864 aaKnown RBP6.52□□□□□ -1.37
USP48-215ENST00000534705 EHHADHQ08426 723 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms