RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 COL14A1Q05707 1796 aaKnown RBP5.37□□□□□ -1.55
CD44-226ENST00000527889 POTECB2RU33 542 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 TNFRSF10BO14763 440 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 PRPF40AO75400 957 aaKnown RBP5.37□□□□□ -1.55
CD44-226ENST00000527889 INHAP05111 366 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 LDHBP07195 334 aaKnown RBP5.37□□□□□ -1.55
CD44-226ENST00000527889 TMPOP42166 694 aaKnown RBP5.37□□□□□ -1.55
CD44-226ENST00000527889 PLCB3Q01970 1234 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 EHHADHQ08426 723 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 SULT6B1Q6IMI4 303 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 TMC4Q7Z404 712 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 METTL16Q86W50 562 aaKnown RBP5.37□□□□□ -1.55
CD44-226ENST00000527889 VTI1AQ96AJ9 217 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 PHACTR3Q96KR7 559 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 DMRTB1Q96MA1 342 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 FAM161BQ96MY7 647 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 SLC4A9Q96Q91 983 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 FAM129BQ96TA1 746 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 DUSP9Q99956 384 aaKnown RBP5.37□□□□□ -1.55
CD44-226ENST00000527889 ZFAND3Q9H8U3 227 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 RNF19AQ9NV58 838 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 PPP1R1BQ9UD71 204 aaPredicted RBP5.37□□□□□ -1.55
CD44-226ENST00000527889 RTL1A6NKG5 1358 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 ARHGEF10O15013 1369 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 ABCC6O95255 1503 aa5.37□□□□□ -1.55
CD44-226ENST00000527889 AFDNP55196 1824 aaKnown RBP5.37□□□□□ -1.55
CD44-226ENST00000527889 AXIN1O15169 862 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 GPR182O15218 404 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 GCP02774 474 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 MAPK8P45983 427 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 RIPK4P57078 832 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 WDR4P57081 412 aaKnown RBP5.36□□□□□ -1.55
CD44-226ENST00000527889 FGD1P98174 961 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 FOXK2Q01167 660 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 SLFN5Q08AF3 891 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 NR5A1Q13285 461 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 CTC1Q2NKJ3 1217 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 COX20Q5RI15 118 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 DUSP27Q5VZP5 1158 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 ALKBH2Q6NS38 261 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 STAG2Q8N3U4 1231 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 USHBP1Q8N6Y0 703 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 IP6K1Q92551 441 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 ITPKCQ96DU7 683 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 ETNK1Q9HBU6 452 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.36□□□□□ -1.555e-38■■■■■ 698.7
CD44-226ENST00000527889 STIM2Q9P246 746 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 SERTAD1Q9UHV2 236 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 SPATA31A3Q5VYP0 1347 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 KIF24Q5T7B8 1368 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 C5P01031 1676 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 NWD2Q9ULI1 1742 aa5.36□□□□□ -1.55
CD44-226ENST00000527889 TOGARAM1Q9Y4F4 1720 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 ADAMTS7Q9UKP4 1686 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 SOS2Q07890 1332 aaPredicted RBP5.35□□□□□ -1.55
CD44-226ENST00000527889 IGSF1Q8N6C5 1336 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 PPP1R12BO60237 982 aaPredicted RBP5.35□□□□□ -1.55
CD44-226ENST00000527889 SMARCA5O60264 1052 aaPredicted RBP5.35□□□□□ -1.55
CD44-226ENST00000527889 NEFMP07197 916 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 BMP1P13497 986 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 DAB2P98082 770 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 NFE2L2Q16236 605 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 PPP1R26Q5T8A7 1209 aaPredicted RBP5.35□□□□□ -1.55
CD44-226ENST00000527889 ARHGEF25Q86VW2 580 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 NT5DC4Q86YG4 428 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 TMEM87AQ8NBN3 555 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 KCNH5Q8NCM2 988 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 ALKBH8Q96BT7 664 aaKnown RBP5.35□□□□□ -1.55
CD44-226ENST00000527889 SPATA32Q96LK8 384 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 THUMPD2Q9BTF0 503 aaKnown RBP5.35□□□□□ -1.55
CD44-226ENST00000527889 C2orf49Q9BVC5 232 aaPredicted RBP5.35□□□□□ -1.55
CD44-226ENST00000527889 PNNQ9H307 717 aaKnown RBP5.35□□□□□ -1.55
CD44-226ENST00000527889 TMPRSS4Q9NRS4 437 aa5.35□□□□□ -1.55
CD44-226ENST00000527889 BCCIPQ9P287 314 aaKnown RBP eCLIP5.35□□□□□ -1.55
CD44-226ENST00000527889 LAMB4A4D0S4 1761 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 KDRP35968 1356 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 KIAA0232Q92628 1395 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 CAPN5O15484 640 aaPredicted RBP5.34□□□□□ -1.55
CD44-226ENST00000527889 SORBS3O60504 671 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 ZIC2O95409 532 aaPredicted RBP5.34□□□□□ -1.55
CD44-226ENST00000527889 CANXP27824 592 aaKnown RBP5.34□□□□□ -1.55
CD44-226ENST00000527889 FANCCQ00597 558 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 CHRNA2Q15822 529 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 FAM26DQ5JW98 314 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 TBCELQ5QJ74 424 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 TRIM46Q7Z4K8 759 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 SLC9A9Q8IVB4 645 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 CCDC116Q8IYX3 515 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 TRMT2AQ8IZ69 625 aaKnown RBP5.34□□□□□ -1.55
CD44-226ENST00000527889 NGEFQ8N5V2 710 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 DNAJC5GQ8N7S2 189 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 TSR2Q969E8 191 aaKnown RBP5.34□□□□□ -1.55
CD44-226ENST00000527889 LRRC59Q96AG4 307 aaKnown RBP5.34□□□□□ -1.55
CD44-226ENST00000527889 NGLY1Q96IV0 654 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 SETDB2Q96T68 719 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 TINF2Q9BSI4 451 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 ATP13A2Q9NQ11 1180 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 CYLDQ9NQC7 956 aa5.34□□□□□ -1.55
CD44-226ENST00000527889 METTL5Q9NRN9 209 aaKnown RBP5.34□□□□□ -1.55
CD44-226ENST00000527889 SCHIP1Q9P0W5 487 aaPredicted RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms