RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MVPQ14764 893 aaKnown RBP25.51■■□□□ 1.67
VPS28-206ENST00000526734 ARMC9Q7Z3E5 817 aa25.51■■□□□ 1.67
VPS28-206ENST00000526734 VEZTQ9HBM0 779 aa25.51■■□□□ 1.67
VPS28-206ENST00000526734 PCDHAC2Q9Y5I4 1007 aa25.51■■□□□ 1.67
VPS28-206ENST00000526734 PDS5AQ29RF7 1337 aaKnown RBP25.51■■□□□ 1.67
VPS28-206ENST00000526734 SALL1Q9NSC2 1324 aa25.51■■□□□ 1.67
VPS28-206ENST00000526734 CLRN2A0PK11 232 aa25.5■■□□□ 1.67
VPS28-206ENST00000526734 FAM155AB1AL88 458 aaPredicted RBP25.5■■□□□ 1.67
VPS28-206ENST00000526734 ATP8B2P98198 1209 aa25.5■■□□□ 1.67
VPS28-206ENST00000526734 TFCP2Q12800 502 aa25.5■■□□□ 1.67
VPS28-206ENST00000526734 TTLL12Q14166 644 aaPredicted RBP25.5■■□□□ 1.67
VPS28-206ENST00000526734 SUPT20HL1Q3ZLR7 823 aa25.5■■□□□ 1.67
VPS28-206ENST00000526734 PRAMEF18Q5VWM3 479 aa25.5■■□□□ 1.67
VPS28-206ENST00000526734 REM2Q8IYK8 340 aaPredicted RBP25.5■■□□□ 1.67
VPS28-206ENST00000526734 SSH3Q8TE77 659 aa25.5■■□□□ 1.67
VPS28-206ENST00000526734 ZNF70Q9UC06 446 aaPredicted RBP25.5■■□□□ 1.67
VPS28-206ENST00000526734 A0A1B0GUL7 405 aa25.49■■□□□ 1.67
VPS28-206ENST00000526734 CCDC102BQ68D86 513 aa25.49■■□□□ 1.67
VPS28-206ENST00000526734 ZGPATQ8N5A5 531 aaKnown RBP25.49■■□□□ 1.67
VPS28-206ENST00000526734 ZDHHC15Q96MV8 337 aa25.49■■□□□ 1.67
VPS28-206ENST00000526734 RCAN3Q9UKA8 241 aa25.49■■□□□ 1.67
VPS28-206ENST00000526734 PHKA1P46020 1223 aa25.48■■□□□ 1.67
VPS28-206ENST00000526734 TNNI2P48788 182 aa25.48■■□□□ 1.67
VPS28-206ENST00000526734 COL13A1Q5TAT6 717 aaPredicted RBP25.48■■□□□ 1.67
VPS28-206ENST00000526734 HHIPL2Q6UWX4 724 aa25.48■■□□□ 1.67
VPS28-206ENST00000526734 UNCXA6NJT0 531 aa25.47■■□□□ 1.67
VPS28-206ENST00000526734 PPP1R12BO60237 982 aaPredicted RBP25.47■■□□□ 1.67
VPS28-206ENST00000526734 GRIK5Q16478 980 aa25.47■■□□□ 1.67
VPS28-206ENST00000526734 RASAL3Q86YV0 1011 aa25.47■■□□□ 1.67
VPS28-206ENST00000526734 TDRD3Q9H7E2 651 aaKnown RBP25.47■■□□□ 1.67
VPS28-206ENST00000526734 TMOD2Q9NZR1 351 aa25.47■■□□□ 1.67
VPS28-206ENST00000526734 PCNTO95613 3336 aa25.47■■□□□ 1.67
VPS28-206ENST00000526734 MYH13Q9UKX3 1938 aa25.47■■□□□ 1.67
VPS28-206ENST00000526734 HSPA8P11142 646 aaKnown RBP25.46■■□□□ 1.67
VPS28-206ENST00000526734 ADORA1P30542 326 aa25.46■■□□□ 1.67
VPS28-206ENST00000526734 TIMM10P62072 90 aa25.46■■□□□ 1.67
VPS28-206ENST00000526734 RASA3Q14644 834 aa25.46■■□□□ 1.67
VPS28-206ENST00000526734 MAP3K11Q16584 847 aa25.46■■□□□ 1.67
VPS28-206ENST00000526734 XAGE2Q96GT9 111 aa25.46■■□□□ 1.67
VPS28-206ENST00000526734 CHMP4BQ9H444 224 aaKnown RBP25.46■■□□□ 1.67
VPS28-206ENST00000526734 GPR108Q9NPR9 543 aa25.46■■□□□ 1.67
VPS28-206ENST00000526734 UBE2Q2LH0YL09 131 aa25.45■■□□□ 1.66
VPS28-206ENST00000526734 FKBP1CQ5VVH2 108 aa25.45■■□□□ 1.66
VPS28-206ENST00000526734 PANK1Q8TE04 598 aa25.45■■□□□ 1.66
VPS28-206ENST00000526734 AOX1Q06278 1338 aa25.44■■□□□ 1.66
VPS28-206ENST00000526734 LDHBP07195 334 aaKnown RBP25.44■■□□□ 1.66
VPS28-206ENST00000526734 OS9Q13438 667 aaPredicted RBP25.44■■□□□ 1.66
VPS28-206ENST00000526734 IFFO2Q5TF58 517 aa25.44■■□□□ 1.66
VPS28-206ENST00000526734 MOB2Q70IA6 237 aa25.44■■□□□ 1.66
VPS28-206ENST00000526734 DDX19BQ9UMR2 479 aa25.44■■□□□ 1.66
VPS28-206ENST00000526734 NOP58Q9Y2X3 529 aaKnown RBP25.44■■□□□ 1.66
VPS28-206ENST00000526734 LBX1P52954 281 aa25.43■■□□□ 1.66
VPS28-206ENST00000526734 KIF23Q02241 960 aaPredicted RBP25.43■■□□□ 1.66
VPS28-206ENST00000526734 LDLRAD1Q5T700 205 aa25.43■■□□□ 1.66
VPS28-206ENST00000526734 GORABQ5T7V8 394 aa25.43■■□□□ 1.66
VPS28-206ENST00000526734 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.43■■□□□ 1.66
VPS28-206ENST00000526734 NEUROD6Q96NK8 337 aa25.43■■□□□ 1.66
VPS28-206ENST00000526734 C1orf115Q9H7X2 142 aa25.43■■□□□ 1.66
VPS28-206ENST00000526734 ANGEL1Q9UNK9 670 aaKnown RBP25.43■■□□□ 1.66
VPS28-206ENST00000526734 SURF6O75683 361 aaKnown RBP25.42■■□□□ 1.66
VPS28-206ENST00000526734 RASGRF1Q13972 1273 aa25.42■■□□□ 1.66
VPS28-206ENST00000526734 SPTY2D1Q68D10 685 aaPredicted RBP25.42■■□□□ 1.66
VPS28-206ENST00000526734 TNS4Q8IZW8 715 aa25.42■■□□□ 1.66
VPS28-206ENST00000526734 SAGE1Q9NXZ1 904 aa25.42■■□□□ 1.66
VPS28-206ENST00000526734 SSC5DA1L4H1 1573 aa25.42■■□□□ 1.66
VPS28-206ENST00000526734 PRDX5P30044 214 aa25.41■■□□□ 1.66
VPS28-206ENST00000526734 APOBEC3HQ6NTF7 200 aaKnown RBP25.41■■□□□ 1.66
VPS28-206ENST00000526734 CEP85Q6P2H3 762 aa25.41■■□□□ 1.66
VPS28-206ENST00000526734 FAM83AQ86UY5 434 aa25.41■■□□□ 1.66
VPS28-206ENST00000526734 UQCRFS1P1P0C7P4 283 aa25.4■■□□□ 1.66
VPS28-206ENST00000526734 IREB2P48200 963 aaKnown RBP25.4■■□□□ 1.66
VPS28-206ENST00000526734 NBPF12Q5TAG4 269 aaPredicted RBP25.4■■□□□ 1.66
VPS28-206ENST00000526734 SLF2Q8IX21 1173 aa25.4■■□□□ 1.66
VPS28-206ENST00000526734 HOOK2Q96ED9 719 aa25.4■■□□□ 1.66
VPS28-206ENST00000526734 ZIC5Q96T25 663 aa25.4■■□□□ 1.66
VPS28-206ENST00000526734 TCP10L2B9ZVM9 353 aa25.39■■□□□ 1.66
VPS28-206ENST00000526734 ARID4AP29374 1257 aaPredicted RBP25.39■■□□□ 1.66
VPS28-206ENST00000526734 PRKG1Q13976 671 aa25.39■■□□□ 1.66
VPS28-206ENST00000526734 RPAP1Q9BWH6 1393 aaPredicted RBP25.39■■□□□ 1.65
VPS28-206ENST00000526734 PDE3AQ14432 1141 aa25.38■■□□□ 1.65
VPS28-206ENST00000526734 TNNI3KQ59H18 835 aa25.38■■□□□ 1.65
VPS28-206ENST00000526734 TEPSINQ96N21 525 aa25.38■■□□□ 1.65
VPS28-206ENST00000526734 DAGLAQ9Y4D2 1042 aa25.38■■□□□ 1.65
VPS28-206ENST00000526734 FPGT-TNNI3KV9GXZ4 949 aa25.38■■□□□ 1.65
VPS28-206ENST00000526734 HSP90AB4PQ58FF6 505 aa25.37■■□□□ 1.65
VPS28-206ENST00000526734 DZIP1Q86YF9 867 aaKnown RBP25.37■■□□□ 1.65
VPS28-206ENST00000526734 ERC1Q8IUD2 1116 aa25.37■■□□□ 1.65
VPS28-206ENST00000526734 CSRNP1Q96S65 589 aa25.37■■□□□ 1.65
VPS28-206ENST00000526734 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.37■■□□□ 1.65
VPS28-206ENST00000526734 RPAP2Q8IXW5 612 aaPredicted RBP25.36■■□□□ 1.65
VPS28-206ENST00000526734 ANKRD13AQ8IZ07 590 aa25.36■■□□□ 1.65
VPS28-206ENST00000526734 IGSF3O75054 1194 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 HMMRO75330 724 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 SREBF2Q12772 1141 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 DIXDC1Q155Q3 683 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 CCDC158Q5M9N0 1113 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 SPATA5Q8NB90 893 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 SLC10A4Q96EP9 437 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 TMEM39BQ9GZU3 492 aa25.35■■□□□ 1.65
VPS28-206ENST00000526734 HMG20BQ9P0W2 317 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms