RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 RNF43Q68DV7 783 aa6.74□□□□□ -1.33
CD44-219ENST00000525685 PRPF40BQ6NWY9 871 aaKnown RBP6.74□□□□□ -1.33
CD44-219ENST00000525685 TMC7Q7Z402 723 aa6.74□□□□□ -1.33
CD44-219ENST00000525685 FAM83CQ9BQN1 747 aa6.74□□□□□ -1.33
CD44-219ENST00000525685 ZNF576Q9H609 170 aa6.74□□□□□ -1.33
CD44-219ENST00000525685 CYP4F12Q9HCS2 524 aa6.74□□□□□ -1.33
CD44-219ENST00000525685 ABCB6Q9NP58 842 aa6.74□□□□□ -1.33
CD44-219ENST00000525685 PODXL2Q9NZ53 605 aa6.74□□□□□ -1.33
CD44-219ENST00000525685 DCTN4Q9UJW0 460 aa6.74□□□□□ -1.33
CD44-219ENST00000525685 B3GALT4O96024 378 aa6.73□□□□□ -1.33
CD44-219ENST00000525685 BEND4Q6ZU67 534 aa6.73□□□□□ -1.33
CD44-219ENST00000525685 ZDHHC13Q8IUH4 622 aa6.73□□□□□ -1.33
CD44-219ENST00000525685 C12orf50Q8NA57 414 aaPredicted RBP6.73□□□□□ -1.33
CD44-219ENST00000525685 GAS2O43903 313 aaKnown RBP6.72□□□□□ -1.33
CD44-219ENST00000525685 CTSBP07858 339 aa6.72□□□□□ -1.33
CD44-219ENST00000525685 MAOBP27338 520 aa6.72□□□□□ -1.33
CD44-219ENST00000525685 PTPN12Q05209 780 aaKnown RBP6.72□□□□□ -1.33
CD44-219ENST00000525685 SGO2Q562F6 1265 aa6.72□□□□□ -1.33
CD44-219ENST00000525685 SND1Q7KZF4 910 aaKnown RBP eCLIP6.72□□□□□ -1.33
CD44-219ENST00000525685 GLIS3Q8NEA6 775 aa6.72□□□□□ -1.33
CD44-219ENST00000525685 EPS8L3Q8TE67 593 aaKnown RBP6.72□□□□□ -1.33
CD44-219ENST00000525685 DBNDD2Q9BQY9 259 aa6.72□□□□□ -1.33
CD44-219ENST00000525685 TRIM56Q9BRZ2 755 aaKnown RBP6.72□□□□□ -1.33
CD44-219ENST00000525685 KCNF1Q9H3M0 494 aa6.72□□□□□ -1.33
CD44-219ENST00000525685 TMEM238LA0A1B0GVL6 79 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 GADD45BO75293 160 aaPredicted RBP6.71□□□□□ -1.34
CD44-219ENST00000525685 CYP11A1P05108 521 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 DRD2P14416 443 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 MAP4P27816 1152 aaKnown RBP6.71□□□□□ -1.34
CD44-219ENST00000525685 MAPK1P28482 360 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 GRM2Q14416 872 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 DSC3Q14574 896 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 POU4F3Q15319 338 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 CCDC27Q2M243 656 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 TRAK1Q9UPV9 953 aa6.71□□□□□ -1.34
CD44-219ENST00000525685 TGFB1P01137 390 aa6.7□□□□□ -1.34
CD44-219ENST00000525685 CD97P48960 835 aa6.7□□□□□ -1.34
CD44-219ENST00000525685 SOX4Q06945 474 aaPredicted RBP6.7□□□□□ -1.34
CD44-219ENST00000525685 RPS26P11Q5JNZ5 115 aaPredicted RBP6.7□□□□□ -1.34
CD44-219ENST00000525685 NBPF11Q86T75 865 aa6.7□□□□□ -1.34
CD44-219ENST00000525685 C2CD4AQ8NCU7 369 aaPredicted RBP6.7□□□□□ -1.34
CD44-219ENST00000525685 DDX54Q8TDD1 881 aaKnown RBP6.7□□□□□ -1.34
CD44-219ENST00000525685 PRR19A6NJB7 356 aa6.69□□□□□ -1.34
CD44-219ENST00000525685 TREHO43280 583 aa6.69□□□□□ -1.34
CD44-219ENST00000525685 ECEL1O95672 775 aa6.69□□□□□ -1.34
CD44-219ENST00000525685 SSTR4P31391 388 aa6.69□□□□□ -1.34
CD44-219ENST00000525685 CDPF1Q6NVV7 123 aa6.69□□□□□ -1.34
CD44-219ENST00000525685 CCDC9Q9Y3X0 531 aaKnown RBP6.69□□□□□ -1.34
CD44-219ENST00000525685 MED26O95402 600 aa6.68□□□□□ -1.34
CD44-219ENST00000525685 ADH5P11766 374 aa6.68□□□□□ -1.34
CD44-219ENST00000525685 FAAP100Q0VG06 881 aa6.68□□□□□ -1.34
CD44-219ENST00000525685 HP1BP3Q5SSJ5 553 aaPredicted RBP6.68□□□□□ -1.34
CD44-219ENST00000525685 PI16Q6UXB8 463 aa6.68□□□□□ -1.34
CD44-219ENST00000525685 SHKBP1Q8TBC3 707 aa6.68□□□□□ -1.34
CD44-219ENST00000525685 CORO1BQ9BR76 489 aa6.68□□□□□ -1.34
CD44-219ENST00000525685 ZFYVE1Q9HBF4 777 aa6.68□□□□□ -1.34
CD44-219ENST00000525685 PNMA6FA0A0J9YX94 578 aa6.67□□□□□ -1.34
CD44-219ENST00000525685 COBLO75128 1261 aa6.67□□□□□ -1.34
CD44-219ENST00000525685 RXRBP28702 533 aa6.67□□□□□ -1.34
CD44-219ENST00000525685 USP11P51784 963 aa6.67□□□□□ -1.34
CD44-219ENST00000525685 PLCB3Q01970 1234 aa6.67□□□□□ -1.34
CD44-219ENST00000525685 ENOX2Q16206 610 aaKnown RBP6.67□□□□□ -1.34
CD44-219ENST00000525685 ZSCAN29Q8IWY8 852 aaPredicted RBP6.67□□□□□ -1.34
CD44-219ENST00000525685 FBLIM1Q8WUP2 373 aa6.67□□□□□ -1.34
CD44-219ENST00000525685 PCMTD2Q9NV79 361 aa6.67□□□□□ -1.34
CD44-219ENST00000525685 NLRP2Q9NX02 1062 aa6.67□□□□□ -1.34
CD44-219ENST00000525685 FAM95CA0A1B0GW59 222 aa6.66□□□□□ -1.34
CD44-219ENST00000525685 KIAA1324LA8MWY0 1029 aaPredicted RBP6.66□□□□□ -1.34
CD44-219ENST00000525685 AP3B2Q13367 1082 aa6.66□□□□□ -1.34
CD44-219ENST00000525685 EZH1Q92800 747 aaPredicted RBP6.66□□□□□ -1.34
CD44-219ENST00000525685 MFSD14AQ96MC6 490 aa6.66□□□□□ -1.34
CD44-219ENST00000525685 BCO2Q9BYV7 579 aa6.66□□□□□ -1.34
CD44-219ENST00000525685 ACTL7BQ9Y614 415 aa6.66□□□□□ -1.34
CD44-219ENST00000525685 WDR64B1ANS9 1081 aa6.65□□□□□ -1.34
CD44-219ENST00000525685 ZNF157P51786 506 aaPredicted RBP6.65□□□□□ -1.34
CD44-219ENST00000525685 MFAP1P55081 439 aaKnown RBP6.65□□□□□ -1.34
CD44-219ENST00000525685 FCGRTP55899 365 aa6.65□□□□□ -1.34
CD44-219ENST00000525685 NFKBIBQ15653 356 aa6.65□□□□□ -1.34
CD44-219ENST00000525685 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.65□□□□□ -1.34
CD44-219ENST00000525685 AKAP4Q5JQC9 854 aa6.65□□□□□ -1.34
CD44-219ENST00000525685 INTS5Q6P9B9 1019 aaKnown RBP6.65□□□□□ -1.34
CD44-219ENST00000525685 PAOXQ6QHF9 649 aa6.65□□□□□ -1.34
CD44-219ENST00000525685 RAD18Q9NS91 495 aa6.65□□□□□ -1.34
CD44-219ENST00000525685 AOC2O75106 756 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 F13BP05160 661 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 SPINK2P20155 84 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 FMR1Q06787 632 aaKnown RBP eCLIP6.64□□□□□ -1.35
CD44-219ENST00000525685 NXPE4Q6UWF7 544 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 DTHD1Q6ZMT9 781 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 DYMQ7RTS9 669 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 ASB16Q96NS5 453 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 WDR18Q9BV38 432 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 GSX1Q9H4S2 264 aaPredicted RBP6.64□□□□□ -1.35
CD44-219ENST00000525685 PPP4R2Q9NY27 417 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 SYNGAP1Q96PV0 1343 aa6.64□□□□□ -1.35
CD44-219ENST00000525685 XRCC5P13010 732 aaKnown RBP6.63□□□□□ -1.35
CD44-219ENST00000525685 GRIK1P39086 918 aa6.63□□□□□ -1.35
CD44-219ENST00000525685 PDE3AQ14432 1141 aa6.63□□□□□ -1.35
CD44-219ENST00000525685 SHISA5Q8N114 240 aa6.63□□□□□ -1.35
CD44-219ENST00000525685 FBXL6Q8N531 539 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms