RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	MFSD14A	Q96MC6	490 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	USP26	Q9BXU7	913 aa		3.66	□□□□□ -1.82
CD44-212	ENST00000524922	GPR182	O15218	404 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	ADH5	P11766	374 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	FOSL1	P15407	271 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	ARL4D	P49703	201 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	PCDH1	Q08174	1060 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	NUTM2G	Q5VZR2	741 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	CBLL1	Q75N03	491 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	TXNDC2	Q86VQ3	553 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	C12orf50	Q8NA57	414 aa	Predicted RBP	3.65	□□□□□ -1.83
CD44-212	ENST00000524922	GLIS3	Q8NEA6	775 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	ASAP3	Q8TDY4	903 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	FBLIM1	Q8WUP2	373 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	CLEC4M	Q9H2X3	399 aa	Predicted RBP	3.65	□□□□□ -1.83
CD44-212	ENST00000524922	KCNF1	Q9H3M0	494 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	ZNF576	Q9H609	170 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	ACSS3	Q9H6R3	686 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	ABCB6	Q9NP58	842 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	PIM2	Q9P1W9	311 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	PRKAG2	Q9UGJ0	569 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	UST	Q9Y2C2	406 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	ACTL7B	Q9Y614	415 aa		3.65	□□□□□ -1.83
CD44-212	ENST00000524922	DYNC1LI2	O43237	492 aa	Predicted RBP	3.64	□□□□□ -1.83
CD44-212	ENST00000524922	SART1	O43290	800 aa	Known RBP	3.64	□□□□□ -1.83
CD44-212	ENST00000524922	ABL1	P00519	1130 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	MAOB	P27338	520 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	GRIK1	P39086	918 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	GSTM4	Q03013	218 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	ORC1	Q13415	861 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	CPSF6	Q16630	551 aa	Known RBP eCLIP	3.64	□□□□□ -1.83
CD44-212	ENST00000524922	ZAR1	Q86SH2	424 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	ABI1	Q8IZP0	508 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	SEMA6C	Q9H3T2	930 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	CYP4F12	Q9HCS2	524 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	C1GALT1	Q9NS00	363 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	CCDC39	Q9UFE4	941 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	PCDHGC5	Q9Y5F6	944 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	SYNGAP1	Q96PV0	1343 aa		3.64	□□□□□ -1.83
CD44-212	ENST00000524922	FAM95C	A0A1B0GW59	222 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	FAM170B	A6NMN3	283 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	FAM177B	A6PVY3	158 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	GAS2	O43903	313 aa	Known RBP	3.63	□□□□□ -1.83
CD44-212	ENST00000524922	WNT11	O96014	354 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	IRAK1	P51617	712 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	FAAP100	Q0VG06	881 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	PRPF40B	Q6NWY9	871 aa	Known RBP	3.63	□□□□□ -1.83
CD44-212	ENST00000524922	FBXL6	Q8N531	539 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	LIN7B	Q9HAP6	207 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	FAM105A	Q9NUU6	356 aa		3.63	□□□□□ -1.83
CD44-212	ENST00000524922	BTBD11	A6QL63	1104 aa		3.62	□□□□□ -1.83
CD44-212	ENST00000524922		H3BRB1	525 aa		3.62	□□□□□ -1.83
CD44-212	ENST00000524922	PTPN12	Q05209	780 aa	Known RBP	3.62	□□□□□ -1.83
CD44-212	ENST00000524922	AAMP	Q13685	434 aa		3.62	□□□□□ -1.83
CD44-212	ENST00000524922	TTC16	Q8NEE8	873 aa		3.62	□□□□□ -1.83
CD44-212	ENST00000524922	WDR18	Q9BV38	432 aa		3.62	□□□□□ -1.83
CD44-212	ENST00000524922	TUT1	Q9H6E5	874 aa	Known RBP	3.62	□□□□□ -1.83
CD44-212	ENST00000524922	NPHS2	Q9NP85	383 aa		3.62	□□□□□ -1.83
CD44-212	ENST00000524922	PPP1R9A	Q9ULJ8	1098 aa		3.62	□□□□□ -1.83
CD44-212	ENST00000524922		U3KQE9	123 aa		3.62	□□□□□ -1.83
CD44-212	ENST00000524922	ARID1B	Q8NFD5	2236 aa	Predicted RBP	3.61	□□□□□ -1.83
CD44-212	ENST00000524922	CYP11A1	P05108	521 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	NFIC	P08651	508 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	ITGB5	P18084	799 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	POU4F3	Q15319	338 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	NFKBIB	Q15653	356 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	PAOX	Q6QHF9	649 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	ZNF765	Q7L2R6	523 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	PDZD3	Q86UT5	571 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	CCDC74A	Q96AQ1	378 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	WDR89	Q96FK6	387 aa	Predicted RBP	3.61	□□□□□ -1.83
CD44-212	ENST00000524922	CITED4	Q96RK1	184 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	MTMR7	Q9Y216	660 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	LEMD3	Q9Y2U8	911 aa		3.61	□□□□□ -1.83
CD44-212	ENST00000524922	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	EIF1AY	O14602	144 aa	Known RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	TMPRSS2	O15393	492 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	PAX4	O43316	350 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	ZNF862	O60290	1169 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	EIF4EBP3	O60516	100 aa	Predicted RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	AOC2	O75106	756 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	CPNE3	O75131	537 aa	Known RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	RXRB	P28702	533 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	USP11	P51784	963 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	GRM2	Q14416	872 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	ALKBH8	Q96BT7	664 aa	Known RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	METTL22	Q9BUU2	404 aa	Predicted RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	OSBPL1A	Q9BXW6	950 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	RBCK1	Q9BYM8	510 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	CCDC86	Q9H6F5	360 aa	Known RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	PAK6	Q9NQU5	681 aa	Predicted RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	CACNA2D2	Q9NY47	1150 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	CRIM1	Q9NZV1	1036 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	ZC3H7B	Q9UGR2	993 aa	Known RBP	3.6	□□□□□ -1.83
CD44-212	ENST00000524922	BRPF3	Q9ULD4	1205 aa		3.6	□□□□□ -1.83
CD44-212	ENST00000524922	TMEM238L	A0A1B0GVL6	79 aa		3.59	□□□□□ -1.83
CD44-212	ENST00000524922	DSC3	Q14574	896 aa		3.59	□□□□□ -1.83
CD44-212	ENST00000524922	KIF4B	Q2VIQ3	1234 aa		3.59	□□□□□ -1.83
CD44-212	ENST00000524922	AKAP4	Q5JQC9	854 aa		3.59	□□□□□ -1.83

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