RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 FUCA2Q9BTY2 467 aa12.97□□□□□ -0.33
SH3RF1-203ENST00000508685 SCAND2PQ9GZW5 306 aaPredicted RBP12.97□□□□□ -0.33
SH3RF1-203ENST00000508685 USP25Q9UHP3 1055 aa12.97□□□□□ -0.33
SH3RF1-203ENST00000508685 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.97□□□□□ -0.33
SH3RF1-203ENST00000508685 COL24A1Q17RW2 1714 aa12.97□□□□□ -0.33
SH3RF1-203ENST00000508685 MYH7P12883 1935 aa12.97□□□□□ -0.33
SH3RF1-203ENST00000508685 GOLGA6L6A8MZA4 724 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 RGL2O15211 777 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 ADCY5O95622 1261 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 UQCRFS1P1P0C7P4 283 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 CCDC192P0DO97 292 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 ANKRD18AQ8IVF6 992 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 SPATA5Q8NB90 893 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 CELF1Q92879 486 aaKnown RBP12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 LRRC2Q9BYS8 371 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 WWC3Q9ULE0 1092 aa12.96□□□□□ -0.33
SH3RF1-203ENST00000508685 UQCRHLA0A096LP55 91 aa12.96□□□□□ -0.34
SH3RF1-203ENST00000508685 GPAA1O43292 621 aa12.96□□□□□ -0.34
SH3RF1-203ENST00000508685 UQCRHP07919 91 aa12.96□□□□□ -0.34
SH3RF1-203ENST00000508685 RFC4P35249 363 aa12.96□□□□□ -0.34
SH3RF1-203ENST00000508685 ADD2P35612 726 aa12.96□□□□□ -0.34
SH3RF1-203ENST00000508685 DNM1Q05193 864 aaKnown RBP12.96□□□□□ -0.34
SH3RF1-203ENST00000508685 TTF1Q15361 905 aaPredicted RBP12.96□□□□□ -0.34
SH3RF1-203ENST00000508685 NYXQ9GZU5 481 aa12.96□□□□□ -0.34
SH3RF1-203ENST00000508685 STK3Q13188 491 aa12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 SLC10A5Q5PT55 438 aa12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 TRAPPC3LQ5T215 181 aa12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 IQSEC3Q9UPP2 1182 aaPredicted RBP12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 ZNF532Q9HCE3 1301 aa12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 E7EWF7 191 aa12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 PDE6AP16499 860 aa12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 HAND2P61296 217 aa12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 Q6ZUG5 572 aa12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 BSDC1Q9NW68 430 aaPredicted RBP12.95□□□□□ -0.34
SH3RF1-203ENST00000508685 LAMA4Q16363 1823 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 A0A1B0GUL6 1792 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 VPS37CA5D8V6 355 aaPredicted RBP12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 FGAP02671 866 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 TXNRD1Q16881 649 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 TPTE2Q6XPS3 522 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 PROM2Q8N271 834 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 CHMP4CQ96CF2 233 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 NLRP3Q96P20 1036 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 MINPP1Q9UNW1 487 aa12.94□□□□□ -0.34
SH3RF1-203ENST00000508685 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 TCRBV5S4A2TA0A5A2 114 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 NPHP1O15259 732 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 CAVIN2O95810 425 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 GYG1P46976 350 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 NOLC1Q14978 699 aaKnown RBP eCLIP12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 ZSCAN25Q6NSZ9 544 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 CHST3Q7LGC8 479 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 BRF1Q92994 677 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 SPTLC3Q9NUV7 552 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 TNRC6CQ9HCJ0 1690 aaKnown RBP12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 GOLGA6L4A6NEF3 574 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 UBE3CQ15386 1083 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 MAP3K11Q16584 847 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 DDX19AQ9NUU7 478 aaKnown RBP12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 RGPD3A6NKT7 1758 aaPredicted RBP12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 RGPD4Q7Z3J3 1758 aa12.93□□□□□ -0.34
SH3RF1-203ENST00000508685 NFIXQ14938 502 aa12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 DNTTIP2Q5QJE6 756 aaKnown RBP12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 DHX32Q7L7V1 743 aaKnown RBP12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 SLC51AQ86UW1 340 aa12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 MAGEB6Q8N7X4 407 aa12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 MYRIPQ8NFW9 859 aa12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 FAM200AQ8TCP9 573 aa12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 NUP62CLQ9H1M0 184 aa12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 COL1A1P02452 1464 aaPredicted RBP12.92□□□□□ -0.34
SH3RF1-203ENST00000508685 DOCK2Q92608 1830 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 CARMIL3Q8ND23 1372 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 HMGB1P09429 215 aaKnown RBP12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 KLRK1P26718 216 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 FGD1P98174 961 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 IMMTQ16891 758 aaKnown RBP12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 GIMAP6Q6P9H5 292 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 ZNF804BA4D1E1 1349 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 UBR3Q6ZT12 1888 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 RPS8P62241 208 aaKnown RBP12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 EXOSC10Q01780 885 aaKnown RBP12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 MAP3K12Q12852 859 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 GTF3C6Q969F1 213 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 ZSCAN16Q9H4T2 348 aaPredicted RBP12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 CTNNA3Q9UI47 895 aa12.91□□□□□ -0.34
SH3RF1-203ENST00000508685 TM4SF1P30408 202 aa12.9□□□□□ -0.34
SH3RF1-203ENST00000508685 R3HDM1Q15032 1099 aaKnown RBP12.9□□□□□ -0.34
SH3RF1-203ENST00000508685 AIDAQ96BJ3 306 aa12.9□□□□□ -0.34
SH3RF1-203ENST00000508685 LLPHQ9BRT6 129 aaKnown RBP12.9□□□□□ -0.34
SH3RF1-203ENST00000508685 NBPF3Q9H094 633 aa12.9□□□□□ -0.34
SH3RF1-203ENST00000508685 PSDA5PKW4 1024 aaPredicted RBP12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 APPP05067 770 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 GTF2F1P35269 517 aaKnown RBP eCLIP12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 APOBRQ0VD83 1088 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 UBE4AQ14139 1066 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 SLC27A3Q5K4L6 730 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 TTC6Q86TZ1 520 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 CNBD1Q8NA66 436 aa12.89□□□□□ -0.35
SH3RF1-203ENST00000508685 SPATA32Q96LK8 384 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms