RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 TDRD3Q9H7E2 651 aaKnown RBP22.41■■□□□ 1.18
NUP50-218ENST00000493456 CCL15-CCL14A0A0B4J2E2 113 aa22.4■■□□□ 1.18
NUP50-218ENST00000493456 VAMP4O75379 141 aa22.4■■□□□ 1.18
NUP50-218ENST00000493456 HIBADHP31937 336 aaKnown RBP22.4■■□□□ 1.18
NUP50-218ENST00000493456 VGLL4Q14135 290 aa22.4■■□□□ 1.18
NUP50-218ENST00000493456 CCL15Q16663 113 aa22.4■■□□□ 1.18
NUP50-218ENST00000493456 DZIP1LQ8IYY4 767 aaKnown RBP22.4■■□□□ 1.18
NUP50-218ENST00000493456 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.4■■□□□ 1.18
NUP50-218ENST00000493456 ZNF594Q96JF6 807 aaPredicted RBP22.4■■□□□ 1.18
NUP50-218ENST00000493456 CSADQ9Y600 493 aa22.4■■□□□ 1.18
NUP50-218ENST00000493456 GRM8O00222 908 aa22.39■■□□□ 1.17
NUP50-218ENST00000493456 WDHD1O75717 1129 aaPredicted RBP22.39■■□□□ 1.17
NUP50-218ENST00000493456 MAP3K9P80192 1104 aa22.39■■□□□ 1.17
NUP50-218ENST00000493456 EPHA10Q5JZY3 1008 aa22.39■■□□□ 1.17
NUP50-218ENST00000493456 TCP10L2B9ZVM9 353 aa22.38■■□□□ 1.17
NUP50-218ENST00000493456 F6X3S4 739 aa22.38■■□□□ 1.17
NUP50-218ENST00000493456 CRKP46108 304 aa22.38■■□□□ 1.17
NUP50-218ENST00000493456 TMEM39BQ9GZU3 492 aa22.38■■□□□ 1.17
NUP50-218ENST00000493456 PTCH2Q9Y6C5 1203 aa22.38■■□□□ 1.17
NUP50-218ENST00000493456 GYG1P46976 350 aa22.37■■□□□ 1.17
NUP50-218ENST00000493456 FXR1P51114 621 aaKnown RBP eCLIP22.37■■□□□ 1.17
NUP50-218ENST00000493456 CDAN1Q8IWY9 1227 aa22.37■■□□□ 1.17
NUP50-218ENST00000493456 CNKSR2Q8WXI2 1034 aa22.37■■□□□ 1.17
NUP50-218ENST00000493456 ZCCHC17Q9NP64 241 aaKnown RBP22.37■■□□□ 1.17
NUP50-218ENST00000493456 SLC4A8Q2Y0W8 1093 aa22.36■■□□□ 1.17
NUP50-218ENST00000493456 FAM43AQ8N2R8 423 aa22.36■■□□□ 1.17
NUP50-218ENST00000493456 OTUD5Q96G74 571 aa22.36■■□□□ 1.17
NUP50-218ENST00000493456 FAM84BQ96KN1 310 aaPredicted RBP22.36■■□□□ 1.17
NUP50-218ENST00000493456 C9orf78Q9NZ63 289 aaPredicted RBP22.36■■□□□ 1.17
NUP50-218ENST00000493456 SPDYE5A6NIY4 337 aa22.35■■□□□ 1.17
NUP50-218ENST00000493456 HDLBPQ00341 1268 aaKnown RBP22.35■■□□□ 1.17
NUP50-218ENST00000493456 KIF22Q14807 665 aa22.35■■□□□ 1.17
NUP50-218ENST00000493456 MROH5Q6ZUA9 1318 aa22.34■■□□□ 1.17
NUP50-218ENST00000493456 ALDH1L1O75891 902 aa22.34■■□□□ 1.17
NUP50-218ENST00000493456 GNRH1P01148 92 aa22.34■■□□□ 1.17
NUP50-218ENST00000493456 CETPP11597 493 aa22.34■■□□□ 1.17
NUP50-218ENST00000493456 EXOSC9Q06265 439 aaKnown RBP22.34■■□□□ 1.17
NUP50-218ENST00000493456 WDR63Q8IWG1 891 aa22.34■■□□□ 1.17
NUP50-218ENST00000493456 TBC1D22AQ8WUA7 517 aa22.34■■□□□ 1.17
NUP50-218ENST00000493456 SZT2Q5T011 3432 aa22.33■■□□□ 1.17
NUP50-218ENST00000493456 TLR2O60603 784 aa22.33■■□□□ 1.17
NUP50-218ENST00000493456 VPS37DQ86XT2 251 aa22.33■■□□□ 1.17
NUP50-218ENST00000493456 ERO1BQ86YB8 467 aa22.33■■□□□ 1.17
NUP50-218ENST00000493456 HOOK2Q96ED9 719 aa22.33■■□□□ 1.17
NUP50-218ENST00000493456 CCDC184Q52MB2 194 aa22.32■■□□□ 1.16
NUP50-218ENST00000493456 TEKT1Q969V4 418 aa22.32■■□□□ 1.16
NUP50-218ENST00000493456 SNCAIPQ9Y6H5 919 aa22.32■■□□□ 1.16
NUP50-218ENST00000493456 RANBP2P49792 3224 aaKnown RBP22.31■■□□□ 1.16
NUP50-218ENST00000493456 PRMT2P55345 433 aa22.31■■□□□ 1.16
NUP50-218ENST00000493456 LACTBP83111 547 aaPredicted RBP22.31■■□□□ 1.16
NUP50-218ENST00000493456 SNAPC2Q13487 334 aa22.31■■□□□ 1.16
NUP50-218ENST00000493456 FBXO33Q7Z6M2 555 aa22.31■■□□□ 1.16
NUP50-218ENST00000493456 FAM83AQ86UY5 434 aa22.31■■□□□ 1.16
NUP50-218ENST00000493456 WRNIP1Q96S55 665 aa22.31■■□□□ 1.16
NUP50-218ENST00000493456 TMOD2Q9NZR1 351 aa22.31■■□□□ 1.16
NUP50-218ENST00000493456 RIPOR2Q9Y4F9 1068 aa22.31■■□□□ 1.16
NUP50-218ENST00000493456 CAVIN4Q5BKX8 364 aa22.3■■□□□ 1.16
NUP50-218ENST00000493456 PUS3Q9BZE2 481 aaKnown RBP22.3■■□□□ 1.16
NUP50-218ENST00000493456 SRCIN1Q9C0H9 1055 aa22.3■■□□□ 1.16
NUP50-218ENST00000493456 COLQQ9Y215 455 aaPredicted RBP22.3■■□□□ 1.16
NUP50-218ENST00000493456 RPAP1Q9BWH6 1393 aaPredicted RBP22.29■■□□□ 1.16
NUP50-218ENST00000493456 BTBD19C9JJ37 291 aa22.29■■□□□ 1.16
NUP50-218ENST00000493456 FRAT2O75474 233 aaPredicted RBP22.29■■□□□ 1.16
NUP50-218ENST00000493456 CHAF1AQ13111 956 aaPredicted RBP22.29■■□□□ 1.16
NUP50-218ENST00000493456 PPIL2Q13356 520 aa22.29■■□□□ 1.16
NUP50-218ENST00000493456 FKBP1CQ5VVH2 108 aa22.29■■□□□ 1.16
NUP50-218ENST00000493456 ZDHHC15Q96MV8 337 aa22.29■■□□□ 1.16
NUP50-218ENST00000493456 MRIQ9BWK5 157 aa22.29■■□□□ 1.16
NUP50-218ENST00000493456 ARHGAP39Q9C0H5 1083 aa22.29■■□□□ 1.16
NUP50-218ENST00000493456 MAST3O60307 1309 aa22.29■■□□□ 1.16
NUP50-218ENST00000493456 IRF6O14896 467 aa22.28■■□□□ 1.16
NUP50-218ENST00000493456 GRIK5Q16478 980 aa22.28■■□□□ 1.16
NUP50-218ENST00000493456 DCAF15Q66K64 600 aa22.28■■□□□ 1.16
NUP50-218ENST00000493456 SH3TC2Q8TF17 1288 aa22.28■■□□□ 1.16
NUP50-218ENST00000493456 SUCLG2Q96I99 432 aa22.28■■□□□ 1.16
NUP50-218ENST00000493456 SUGT1Q9Y2Z0 365 aa22.28■■□□□ 1.16
NUP50-218ENST00000493456 CEP290O15078 2479 aa22.27■■□□□ 1.16
NUP50-218ENST00000493456 CACNB3P54284 484 aa22.27■■□□□ 1.16
NUP50-218ENST00000493456 SLC4A10Q6U841 1118 aa22.27■■□□□ 1.16
NUP50-218ENST00000493456 ZKSCAN4Q969J2 545 aaPredicted RBP22.27■■□□□ 1.16
NUP50-218ENST00000493456 IQSEC3Q9UPP2 1182 aaPredicted RBP22.27■■□□□ 1.16
NUP50-218ENST00000493456 MYCP01106 439 aaPredicted RBP22.26■■□□□ 1.15
NUP50-218ENST00000493456 PPATQ06203 517 aa22.26■■□□□ 1.15
NUP50-218ENST00000493456 METTL24Q5JXM2 366 aa22.26■■□□□ 1.15
NUP50-218ENST00000493456 KAZALD1Q96I82 304 aa22.26■■□□□ 1.15
NUP50-218ENST00000493456 ZSWIM8A7E2V4 1837 aa22.26■■□□□ 1.15
NUP50-218ENST00000493456 UTYO14607 1347 aa22.26■■□□□ 1.15
NUP50-218ENST00000493456 RABL6Q3YEC7 729 aaPredicted RBP22.25■■□□□ 1.15
NUP50-218ENST00000493456 H0YGN5 161 aa22.24■■□□□ 1.15
NUP50-218ENST00000493456 PDE8BO95263 885 aa22.24■■□□□ 1.15
NUP50-218ENST00000493456 NBPF7P0C2Y1 421 aaPredicted RBP22.24■■□□□ 1.15
NUP50-218ENST00000493456 APOBEC3HQ6NTF7 200 aaKnown RBP22.24■■□□□ 1.15
NUP50-218ENST00000493456 C17orf99Q6UX52 265 aa22.24■■□□□ 1.15
NUP50-218ENST00000493456 ZNF341Q9BYN7 854 aa22.24■■□□□ 1.15
NUP50-218ENST00000493456 KIF16BQ96L93 1317 aa22.24■■□□□ 1.15
NUP50-218ENST00000493456 HOXD10P28358 340 aa22.23■■□□□ 1.15
NUP50-218ENST00000493456 HHIPL2Q6UWX4 724 aa22.23■■□□□ 1.15
NUP50-218ENST00000493456 ANKRD23Q86SG2 305 aa22.23■■□□□ 1.15
NUP50-218ENST00000493456 VGLL2Q8N8G2 317 aa22.23■■□□□ 1.15
NUP50-218ENST00000493456 NKX2-3Q8TAU0 364 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms