RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 SULF2Q8IWU5 870 aa9.34□□□□□ -0.91
VPS50-212ENST00000476413 TRIM42Q8IWZ5 723 aa9.34□□□□□ -0.91
VPS50-212ENST00000476413 CACTIN-AS1Q8N1I8 211 aa9.34□□□□□ -0.91
VPS50-212ENST00000476413 NT5C1AQ9BXI3 368 aa9.34□□□□□ -0.91
VPS50-212ENST00000476413 SHISA8B8ZZ34 492 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 ZNF252P-AS1Q0IIN9 211 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 KANK3Q6NY19 840 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 CHSY3Q70JA7 882 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 IL22RA1Q8N6P7 574 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 GOLM1Q8NBJ4 401 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 SLC16A10Q8TF71 515 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 EDARADDQ8WWZ3 215 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 DHX38Q92620 1227 aaKnown RBP9.33□□□□□ -0.92
VPS50-212ENST00000476413 NRSN2Q9GZP1 204 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 UBP1Q9NZI7 540 aa9.33□□□□□ -0.92
VPS50-212ENST00000476413 SUPT16HQ9Y5B9 1047 aaKnown RBP9.33□□□□□ -0.92
VPS50-212ENST00000476413 OIP5O43482 229 aa9.32□□□□□ -0.92
VPS50-212ENST00000476413 COL9A3Q14050 684 aaPredicted RBP9.32□□□□□ -0.92
VPS50-212ENST00000476413 TXNDC11Q6PKC3 985 aa9.32□□□□□ -0.92
VPS50-212ENST00000476413 GALNT6Q8NCL4 622 aa9.32□□□□□ -0.92
VPS50-212ENST00000476413 GRIN3AQ8TCU5 1115 aa9.32□□□□□ -0.92
VPS50-212ENST00000476413 GAL3ST3Q96A11 431 aa9.32□□□□□ -0.92
VPS50-212ENST00000476413 SOX17Q9H6I2 414 aaPredicted RBP9.32□□□□□ -0.92
VPS50-212ENST00000476413 FAM221AA4D161 298 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 M0R082 166 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 F13A1P00488 732 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 ATP2B1P20020 1258 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 ARNTP27540 789 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 SNAP47Q5SQN1 464 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 BNC2Q6ZN30 1099 aaPredicted RBP9.31□□□□□ -0.92
VPS50-212ENST00000476413 FAM196AQ6ZSG2 479 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 ZNF417Q8TAU3 575 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 ARMC5Q96C12 935 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 SEC16BQ96JE7 1060 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 BTBD6Q96KE9 485 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 ZNF587Q96SQ5 575 aaPredicted RBP9.31□□□□□ -0.92
VPS50-212ENST00000476413 GINM1Q9NU53 330 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 CYP8B1Q9UNU6 501 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 PPME1Q9Y570 386 aa9.31□□□□□ -0.92
VPS50-212ENST00000476413 LILRB5O75023 590 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 CDC25BP30305 580 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 SOX9P48436 509 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 CABP4P57796 275 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 PTPN11Q06124 597 aaPredicted RBP9.3□□□□□ -0.92
VPS50-212ENST00000476413 MPRIPQ6WCQ1 1025 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 CCDC84Q86UT8 332 aaPredicted RBP9.3□□□□□ -0.92
VPS50-212ENST00000476413 VPS37DQ86XT2 251 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 FBXO27Q8NI29 283 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 LRRC3Q9BY71 257 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 PRDM6Q9NQX0 595 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 CACNA2D2Q9NY47 1150 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 SAMM50Q9Y512 469 aa9.3□□□□□ -0.92
VPS50-212ENST00000476413 LINC01387J3KSC0 135 aa9.29□□□□□ -0.92
VPS50-212ENST00000476413 HOXB4P17483 251 aaPredicted RBP9.29□□□□□ -0.92
VPS50-212ENST00000476413 SEPT6Q14141 434 aa9.29□□□□□ -0.92
VPS50-212ENST00000476413 SLITRK4Q8IW52 837 aa9.29□□□□□ -0.92
VPS50-212ENST00000476413 GATAD2BQ8WXI9 593 aa9.29□□□□□ -0.92
VPS50-212ENST00000476413 SPATA32Q96LK8 384 aa9.29□□□□□ -0.92
VPS50-212ENST00000476413 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.29□□□□□ -0.92
VPS50-212ENST00000476413 LRRC4BQ9NT99 713 aa9.29□□□□□ -0.92
VPS50-212ENST00000476413 EFR3BQ9Y2G0 817 aa9.29□□□□□ -0.92
VPS50-212ENST00000476413 ECEL1O95672 775 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 BCRP11274 1271 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 NID1P14543 1247 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 SELPP16109 830 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 GTF2F1P35269 517 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS50-212ENST00000476413 NASPP49321 788 aaPredicted RBP9.28□□□□□ -0.92
VPS50-212ENST00000476413 PIP4K2BP78356 416 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 RBL2Q08999 1139 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 MSL1Q68DK7 614 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 LLGL2Q6P1M3 1020 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 LYPD4Q6UWN0 246 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 DNAJC2Q99543 621 aaKnown RBP9.28□□□□□ -0.92
VPS50-212ENST00000476413 MIR1-1HGQ9H1L0 117 aa9.28□□□□□ -0.92
VPS50-212ENST00000476413 FAM177BA6PVY3 158 aa9.27□□□□□ -0.93
VPS50-212ENST00000476413 FSCN2O14926 492 aa9.27□□□□□ -0.93
VPS50-212ENST00000476413 CILPO75339 1184 aa9.27□□□□□ -0.93
VPS50-212ENST00000476413 APOBRQ0VD83 1088 aa9.27□□□□□ -0.93
VPS50-212ENST00000476413 AP3B2Q13367 1082 aa9.27□□□□□ -0.93
VPS50-212ENST00000476413 SLC7A3Q8WY07 619 aa9.27□□□□□ -0.93
VPS50-212ENST00000476413 WNT8BQ93098 351 aa9.27□□□□□ -0.93
VPS50-212ENST00000476413 EMILIN2Q9BXX0 1053 aa9.27□□□□□ -0.93
VPS50-212ENST00000476413 ROBO2Q9HCK4 1378 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 CTSBP07858 339 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 CELA2BP08218 269 aaPredicted RBP9.26□□□□□ -0.93
VPS50-212ENST00000476413 GSTP1P09211 210 aaKnown RBP9.26□□□□□ -0.93
VPS50-212ENST00000476413 GMPRP36959 345 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 GSTM4Q03013 218 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 C19orf57Q0VDD7 668 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 SETDB1Q15047 1291 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 LRRC14Q15048 493 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 SCARA3Q6AZY7 606 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 WFDC8Q8IUA0 241 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 WHAMMQ8TF30 809 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 CBX8Q9HC52 389 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 OSGEPQ9NPF4 335 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 SHROOM4Q9ULL8 1493 aa9.26□□□□□ -0.93
VPS50-212ENST00000476413 TLR3O15455 904 aaKnown RBP9.25□□□□□ -0.93
VPS50-212ENST00000476413 GALNT11Q8NCW6 608 aa9.25□□□□□ -0.93
VPS50-212ENST00000476413 JARID2Q92833 1246 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms