RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 TMC7Q7Z402 723 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 SCUBE3Q8IX30 993 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 IFNL2Q8IZJ0 200 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 OGFOD1Q8N543 542 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 MRFAP1L1Q96HT8 127 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 PHACTR3Q96KR7 559 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 PRDM9Q9NQV7 894 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 DDX56Q9NY93 547 aaKnown RBP5.72□□□□□ -1.49
SF3B1-202ENST00000409915 PRR12Q9ULL5 1215 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 NUDCQ9Y266 331 aa5.72□□□□□ -1.49
SF3B1-202ENST00000409915 KAT6BQ8WYB5 2073 aa5.71□□□□□ -1.49
SF3B1-202ENST00000409915 PLEKHG2Q9H7P9 1386 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 SENP3-EIF4A1A0A087X0R7 540 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 SH3BP5O60239 455 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 LDHBP07195 334 aaKnown RBP5.71□□□□□ -1.5
SF3B1-202ENST00000409915 XRCC5P13010 732 aaKnown RBP5.71□□□□□ -1.5
SF3B1-202ENST00000409915 GCGRP47871 477 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 TBX4P57082 545 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 USP46P62068 366 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 CALD1Q05682 793 aaKnown RBP5.71□□□□□ -1.5
SF3B1-202ENST00000409915 FMR1Q06787 632 aaKnown RBP eCLIP5.71□□□□□ -1.52e-7■■□□□ 13.2
SF3B1-202ENST00000409915 KCNH2Q12809 1159 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 NFE2L2Q16236 605 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 TXNRD1Q16881 649 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 AMOTQ4VCS5 1084 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 C1orf141Q5JVX7 400 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 TMC4Q7Z404 712 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 PIGBQ92521 554 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 DUSP9Q99956 384 aaKnown RBP5.71□□□□□ -1.5
SF3B1-202ENST00000409915 LGR6Q9HBX8 967 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 RNF19AQ9NV58 838 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 SEPT3Q9UH03 358 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 SLC27A5Q9Y2P5 690 aa5.71□□□□□ -1.5
SF3B1-202ENST00000409915 RGPD3A6NKT7 1758 aaPredicted RBP5.7□□□□□ -1.5
SF3B1-202ENST00000409915 RGPD4Q7Z3J3 1758 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 PALLDQ8WX93 1383 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 MAP3K5Q99683 1374 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 ITGB4P16144 1822 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 ZBBXA8MT70 800 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 ENPP3O14638 875 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 ANP32CO43423 234 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 PRPF40AO75400 957 aaKnown RBP5.7□□□□□ -1.5
SF3B1-202ENST00000409915 PSMD2Q13200 908 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 R3HDM1Q15032 1099 aaKnown RBP5.7□□□□□ -1.5
SF3B1-202ENST00000409915 RNF19BQ6ZMZ0 732 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 FMNL3Q8IVF7 1028 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 TMTC2Q8N394 836 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 STAG1Q8WVM7 1258 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 THAP11Q96EK4 314 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 DCAF5Q96JK2 942 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 RBCK1Q9BYM8 510 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 SPC25Q9HBM1 224 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 LRRC4BQ9NT99 713 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 TMOD3Q9NYL9 352 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 ASAP1Q9ULH1 1129 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 PAPPAQ13219 1627 aa5.7□□□□□ -1.5
SF3B1-202ENST00000409915 K7ELQ4 463 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 PLSCR1O15162 318 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 RNMTO43148 476 aaKnown RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 TREHO43280 583 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 HSP90AB1P08238 724 aaKnown RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 PAX3P23760 479 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 MAPK8P45983 427 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 CABP4P57796 275 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 RHBDL3P58872 404 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 CLDN10P78369 228 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 DCTN1Q14203 1278 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 WDR43Q15061 677 aaKnown RBP eCLIP5.69□□□□□ -1.55e-8■■□□□ 13.9
SF3B1-202ENST00000409915 ZNF827Q17R98 1081 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 LONRF3Q496Y0 759 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 AKAP4Q5JQC9 854 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 TSHZ1Q6ZSZ6 1077 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 MCF2L2Q86YR7 1114 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 NME8Q8N427 588 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 FAM160A2Q8N612 972 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 PLPP7Q8NBV4 271 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 GAS2L2Q8NHY3 880 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 PLEKHF1Q96S99 279 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 THUMPD2Q9BTF0 503 aaKnown RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 MKNK1Q9BUB5 465 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 DNAAF2Q9NVR5 837 aaKnown RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 CCNL1Q9UK58 526 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 PRDM4Q9UKN5 801 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 PDZRN3Q9UPQ7 1066 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 RRP7AQ9Y3A4 280 aaKnown RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 V9GY48 417 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-202ENST00000409915 SCN11AQ9UI33 1791 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 MRC1P22897 1456 aa5.69□□□□□ -1.5
SF3B1-202ENST00000409915 GNAT3A8MTJ3 354 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 ERVV-2B6SEH9 535 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 C6orf229H3BNL8 230 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 ADH1BP00325 375 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 DAB2P98082 770 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 SLC39A6Q13433 755 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 BIRC2Q13490 618 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 EML3Q32P44 896 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 ZFYVE27Q5T4F4 411 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 TRAF7Q6Q0C0 670 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 SMIM5Q71RC9 77 aa5.68□□□□□ -1.5
SF3B1-202ENST00000409915 MCM10Q7L590 875 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms