RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 MAP4K1Q92918 833 aa22.34■■□□□ 1.17
CCDC50-202ENST00000392456 SNX14Q9Y5W7 946 aa22.34■■□□□ 1.17
CCDC50-202ENST00000392456 GOLGA6L22H0YM25 854 aa22.34■■□□□ 1.17
CCDC50-202ENST00000392456 HMGB2P26583 209 aaKnown RBP22.34■■□□□ 1.17
CCDC50-202ENST00000392456 MCMDC2Q4G0Z9 681 aa22.34■■□□□ 1.17
CCDC50-202ENST00000392456 PRPF40BQ6NWY9 871 aaKnown RBP22.34■■□□□ 1.17
CCDC50-202ENST00000392456 OSBP2Q969R2 916 aa22.34■■□□□ 1.17
CCDC50-202ENST00000392456 UPF3BQ9BZI7 483 aaKnown RBP22.34■■□□□ 1.17
CCDC50-202ENST00000392456 TAF6LQ9Y6J9 622 aa22.34■■□□□ 1.17
CCDC50-202ENST00000392456 RNF113AO15541 343 aaKnown RBP22.33■■□□□ 1.17
CCDC50-202ENST00000392456 MCCP23508 829 aa22.33■■□□□ 1.17
CCDC50-202ENST00000392456 GRAPQ13588 217 aa22.33■■□□□ 1.17
CCDC50-202ENST00000392456 GRAPLQ8TC17 118 aaPredicted RBP22.33■■□□□ 1.17
CCDC50-202ENST00000392456 RBM8AQ9Y5S9 174 aaKnown RBP22.33■■□□□ 1.17
CCDC50-202ENST00000392456 RFX7Q2KHR2 1363 aa22.33■■□□□ 1.16
CCDC50-202ENST00000392456 COL9A3Q14050 684 aaPredicted RBP22.33■■□□□ 1.16
CCDC50-202ENST00000392456 NECTIN1Q15223 517 aa22.33■■□□□ 1.16
CCDC50-202ENST00000392456 ZMYM1Q5SVZ6 1142 aa22.33■■□□□ 1.16
CCDC50-202ENST00000392456 VPS53Q5VIR6 699 aa22.33■■□□□ 1.16
CCDC50-202ENST00000392456 SPATA5Q8NB90 893 aa22.33■■□□□ 1.16
CCDC50-202ENST00000392456 FLAD1Q8NFF5 587 aa22.33■■□□□ 1.16
CCDC50-202ENST00000392456 EPB41L2O43491 1005 aaKnown RBP22.32■■□□□ 1.16
CCDC50-202ENST00000392456 NOP2P46087 812 aaKnown RBP22.32■■□□□ 1.16
CCDC50-202ENST00000392456 UBE4AQ14139 1066 aa22.32■■□□□ 1.16
CCDC50-202ENST00000392456 NOLC1Q14978 699 aaKnown RBP eCLIP22.32■■□□□ 1.16
CCDC50-202ENST00000392456 TMED8Q6PL24 325 aaPredicted RBP22.32■■□□□ 1.16
CCDC50-202ENST00000392456 NEK4P51957 841 aa22.32■■□□□ 1.16
CCDC50-202ENST00000392456 TXNRD3Q86VQ6 643 aa22.32■■□□□ 1.16
CCDC50-202ENST00000392456 RPGRQ92834 1020 aaKnown RBP22.32■■□□□ 1.16
CCDC50-202ENST00000392456 CTNNA3Q9UI47 895 aa22.32■■□□□ 1.16
CCDC50-202ENST00000392456 DDX41Q9UJV9 622 aaKnown RBP22.32■■□□□ 1.16
CCDC50-202ENST00000392456 M0R2C6 588 aa22.31■■□□□ 1.16
CCDC50-202ENST00000392456 UQCRFS1P1P0C7P4 283 aa22.31■■□□□ 1.16
CCDC50-202ENST00000392456 ANAPC15P60006 121 aa22.31■■□□□ 1.16
CCDC50-202ENST00000392456 FAM84BQ96KN1 310 aaPredicted RBP22.31■■□□□ 1.16
CCDC50-202ENST00000392456 MAST3O60307 1309 aa22.31■■□□□ 1.16
CCDC50-202ENST00000392456 CTIFO43310 598 aaKnown RBP22.31■■□□□ 1.16
CCDC50-202ENST00000392456 ADCK5Q3MIX3 580 aa22.31■■□□□ 1.16
CCDC50-202ENST00000392456 ARAP2Q8WZ64 1704 aa22.31■■□□□ 1.16
CCDC50-202ENST00000392456 MYO5AQ9Y4I1 1855 aaKnown RBP22.3■■□□□ 1.16
CCDC50-202ENST00000392456 A0A1B0GUL6 1792 aa22.3■■□□□ 1.16
CCDC50-202ENST00000392456 PUS7LQ9H0K6 701 aaKnown RBP22.3■■□□□ 1.16
CCDC50-202ENST00000392456 MORC2Q9Y6X9 1032 aaPredicted RBP22.3■■□□□ 1.16
CCDC50-202ENST00000392456 IDH1O75874 414 aaKnown RBP22.3■■□□□ 1.16
CCDC50-202ENST00000392456 CPA1P15085 419 aa22.3■■□□□ 1.16
CCDC50-202ENST00000392456 EP400NLQ6ZTU2 488 aa22.3■■□□□ 1.16
CCDC50-202ENST00000392456 IL17RAQ96F46 866 aa22.3■■□□□ 1.16
CCDC50-202ENST00000392456 RGPD3A6NKT7 1758 aaPredicted RBP22.29■■□□□ 1.16
CCDC50-202ENST00000392456 RGPD4Q7Z3J3 1758 aa22.29■■□□□ 1.16
CCDC50-202ENST00000392456 KLRG2A4D1S0 409 aaPredicted RBP22.29■■□□□ 1.16
CCDC50-202ENST00000392456 WWC3Q9ULE0 1092 aa22.29■■□□□ 1.16
CCDC50-202ENST00000392456 WASHC4Q2M389 1173 aa22.29■■□□□ 1.16
CCDC50-202ENST00000392456 CREB3L3Q68CJ9 461 aa22.29■■□□□ 1.16
CCDC50-202ENST00000392456 GPR101Q96P66 508 aaPredicted RBP22.29■■□□□ 1.16
CCDC50-202ENST00000392456 HELLSQ9NRZ9 838 aa22.29■■□□□ 1.16
CCDC50-202ENST00000392456 ZNF804BA4D1E1 1349 aa22.28■■□□□ 1.16
CCDC50-202ENST00000392456 SLC9C2Q5TAH2 1124 aa22.28■■□□□ 1.16
CCDC50-202ENST00000392456 BANK1Q8NDB2 785 aa22.28■■□□□ 1.16
CCDC50-202ENST00000392456 MYCBPQ99417 103 aaPredicted RBP22.28■■□□□ 1.16
CCDC50-202ENST00000392456 FOXD4L1Q9NU39 408 aa22.28■■□□□ 1.16
CCDC50-202ENST00000392456 K7ELQ4 463 aaPredicted RBP22.28■■□□□ 1.16
CCDC50-202ENST00000392456 TNNT3P45378 269 aaPredicted RBP22.28■■□□□ 1.16
CCDC50-202ENST00000392456 SPTLC3Q9NUV7 552 aa22.28■■□□□ 1.16
CCDC50-202ENST00000392456 STK32BQ9NY57 414 aa22.28■■□□□ 1.16
CCDC50-202ENST00000392456 A0A0G2JLW4 131 aa22.27■■□□□ 1.16
CCDC50-202ENST00000392456 SLC27A2O14975 620 aa22.27■■□□□ 1.16
CCDC50-202ENST00000392456 CAVIN1Q6NZI2 390 aaKnown RBP22.27■■□□□ 1.16
CCDC50-202ENST00000392456 TRERF1Q96PN7 1200 aa22.27■■□□□ 1.16
CCDC50-202ENST00000392456 ANKRD2Q9GZV1 360 aa22.27■■□□□ 1.16
CCDC50-202ENST00000392456 ANKIB1Q9P2G1 1089 aa22.27■■□□□ 1.16
CCDC50-202ENST00000392456 SF3B2Q13435 895 aaKnown RBP22.26■■□□□ 1.15
CCDC50-202ENST00000392456 KCNB2Q92953 911 aa22.26■■□□□ 1.15
CCDC50-202ENST00000392456 BRIP1Q9BX63 1249 aa22.26■■□□□ 1.15
CCDC50-202ENST00000392456 PARP3Q9Y6F1 533 aa22.26■■□□□ 1.15
CCDC50-202ENST00000392456 COL1A1P02452 1464 aaPredicted RBP22.26■■□□□ 1.15
CCDC50-202ENST00000392456 ERICH4A6NGS2 130 aa22.26■■□□□ 1.15
CCDC50-202ENST00000392456 HOXA10P31260 410 aaPredicted RBP22.26■■□□□ 1.15
CCDC50-202ENST00000392456 ADD2P35612 726 aa22.26■■□□□ 1.15
CCDC50-202ENST00000392456 BAG6P46379 1132 aa22.26■■□□□ 1.15
CCDC50-202ENST00000392456 RBM17Q96I25 401 aaKnown RBP22.26■■□□□ 1.15
CCDC50-202ENST00000392456 NCAPGQ9BPX3 1015 aa22.26■■□□□ 1.15
CCDC50-202ENST00000392456 FOXP2O15409 715 aa22.25■■□□□ 1.15
CCDC50-202ENST00000392456 GTF2A1P52655 376 aaPredicted RBP22.25■■□□□ 1.15
CCDC50-202ENST00000392456 FBXO33Q7Z6M2 555 aa22.25■■□□□ 1.15
CCDC50-202ENST00000392456 IRS2Q9Y4H2 1338 aa22.25■■□□□ 1.15
CCDC50-202ENST00000392456 BAG4O95429 457 aaKnown RBP22.25■■□□□ 1.15
CCDC50-202ENST00000392456 HSPD1P10809 573 aaKnown RBP22.25■■□□□ 1.15
CCDC50-202ENST00000392456 GPSM2P81274 684 aa22.25■■□□□ 1.15
CCDC50-202ENST00000392456 TTF1Q15361 905 aaPredicted RBP22.25■■□□□ 1.15
CCDC50-202ENST00000392456 NOL8Q76FK4 1167 aaKnown RBP22.25■■□□□ 1.15
CCDC50-202ENST00000392456 RSPH14Q9UHP6 348 aa22.25■■□□□ 1.15
CCDC50-202ENST00000392456 ANKRD31Q8N7Z5 1873 aa22.25■■□□□ 1.15
CCDC50-202ENST00000392456 RIOK3O14730 519 aaKnown RBP22.24■■□□□ 1.15
CCDC50-202ENST00000392456 PDE6AP16499 860 aa22.24■■□□□ 1.15
CCDC50-202ENST00000392456 CAVIN4Q5BKX8 364 aa22.24■■□□□ 1.15
CCDC50-202ENST00000392456 OLFM4Q6UX06 510 aa22.24■■□□□ 1.15
CCDC50-202ENST00000392456 VPS37DQ86XT2 251 aa22.24■■□□□ 1.15
CCDC50-202ENST00000392456 ST18O60284 1047 aa22.24■■□□□ 1.15
CCDC50-202ENST00000392456 CT47A1Q5JQC4 288 aaPredicted RBP22.24■■□□□ 1.15
CCDC50-202ENST00000392456 EGFL6Q8IUX8 553 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms