RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 ERICH3Q5RHP9 1530 aa7.32□□□□□ -1.24
USP48-202ENST00000374730 LOC100289279A0A1B0GTE1 492 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 SART1O43290 800 aaKnown RBP7.31□□□□□ -1.24
USP48-202ENST00000374730 GRIA4P48058 902 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 PREPP48147 710 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 PCDH1Q08174 1060 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 TMPRSS13Q9BYE2 586 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 SUGCTQ9HAC7 445 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 NPHS2Q9NP85 383 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 STOML1Q9UBI4 398 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 CUX1P39880 1505 aa7.31□□□□□ -1.24
USP48-202ENST00000374730 EIF1AYO14602 144 aaKnown RBP7.3□□□□□ -1.24
USP48-202ENST00000374730 TMC1Q8TDI8 760 aa7.3□□□□□ -1.24
USP48-202ENST00000374730 USP26Q9BXU7 913 aa7.3□□□□□ -1.24
USP48-202ENST00000374730 NRSN2Q9GZP1 204 aa7.3□□□□□ -1.24
USP48-202ENST00000374730 IGLV1-40P01703 118 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 ITPKAP23677 461 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 GSTM4Q03013 218 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 PTPN12Q05209 780 aaKnown RBP7.29□□□□□ -1.24
USP48-202ENST00000374730 SPRED3Q2MJR0 410 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 PRPF40BQ6NWY9 871 aaKnown RBP7.29□□□□□ -1.24
USP48-202ENST00000374730 FAM20CQ8IXL6 584 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 SMG8Q8ND04 991 aaKnown RBP7.29□□□□□ -1.24
USP48-202ENST00000374730 CCDC74AQ96AQ1 378 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 NIF3L1Q9GZT8 377 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 EHD4Q9H223 541 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 CYP4F12Q9HCS2 524 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 DCTN4Q9UJW0 460 aa7.29□□□□□ -1.24
USP48-202ENST00000374730 CC2D2AQ9P2K1 1620 aa7.28□□□□□ -1.24
USP48-202ENST00000374730 TIAF1O95411 115 aa7.28□□□□□ -1.24
USP48-202ENST00000374730 NUTM2GQ5VZR2 741 aa7.28□□□□□ -1.24
USP48-202ENST00000374730 CLEC10AQ8IUN9 316 aa7.28□□□□□ -1.24
USP48-202ENST00000374730 CSRNP1Q96S65 589 aa7.28□□□□□ -1.24
USP48-202ENST00000374730 ZNF576Q9H609 170 aa7.28□□□□□ -1.24
USP48-202ENST00000374730 C7orf69Q9H7B7 122 aa7.28□□□□□ -1.24
USP48-202ENST00000374730 GAS2O43903 313 aaKnown RBP7.27□□□□□ -1.25
USP48-202ENST00000374730 B3GALT4O96024 378 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 BMP3P12645 472 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 NFIAQ12857 509 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 ZNF423Q2M1K9 1284 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 EXOSC6Q5RKV6 272 aaKnown RBP7.27□□□□□ -1.25
USP48-202ENST00000374730 HP1BP3Q5SSJ5 553 aaPredicted RBP7.27□□□□□ -1.25
USP48-202ENST00000374730 RNF43Q68DV7 783 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 DDX54Q8TDD1 881 aaKnown RBP7.27□□□□□ -1.25
USP48-202ENST00000374730 FAM83CQ9BQN1 747 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 ABCB6Q9NP58 842 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 TRAK1Q9UPV9 953 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 PRXQ9BXM0 1461 aa7.27□□□□□ -1.25
USP48-202ENST00000374730 RAPGEF2Q9Y4G8 1499 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 HYAL3O43820 417 aaPredicted RBP7.26□□□□□ -1.25
USP48-202ENST00000374730 DLGAP3O95886 979 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 CYP11A1P05108 521 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 RPS26P11Q5JNZ5 115 aaPredicted RBP7.26□□□□□ -1.25
USP48-202ENST00000374730 BEND4Q6ZU67 534 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 TMC7Q7Z402 723 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 TRIM42Q8IWZ5 723 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 DBNDD2Q9BQY9 259 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 ZFYVE1Q9HBF4 777 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 BIN2Q9UBW5 565 aaPredicted RBP7.26□□□□□ -1.25
USP48-202ENST00000374730 CLIP1P30622 1438 aa7.26□□□□□ -1.25
USP48-202ENST00000374730 HMX2A2RU54 273 aa7.25□□□□□ -1.25
USP48-202ENST00000374730 GADD45BO75293 160 aaPredicted RBP7.25□□□□□ -1.25
USP48-202ENST00000374730 KCNA1Q09470 495 aa7.25□□□□□ -1.25
USP48-202ENST00000374730 VPS8Q8N3P4 1428 aa7.25□□□□□ -1.25
USP48-202ENST00000374730 TMEM238LA0A1B0GVL6 79 aa7.24□□□□□ -1.25
USP48-202ENST00000374730 POU4F3Q15319 338 aa7.24□□□□□ -1.25
USP48-202ENST00000374730 NBPF11Q86T75 865 aa7.24□□□□□ -1.25
USP48-202ENST00000374730 ZDHHC13Q8IUH4 622 aa7.24□□□□□ -1.25
USP48-202ENST00000374730 C12orf50Q8NA57 414 aaPredicted RBP7.24□□□□□ -1.25
USP48-202ENST00000374730 TRIM56Q9BRZ2 755 aaKnown RBP7.24□□□□□ -1.25
USP48-202ENST00000374730 KCNF1Q9H3M0 494 aa7.24□□□□□ -1.25
USP48-202ENST00000374730 KIF27Q86VH2 1401 aa7.24□□□□□ -1.25
USP48-202ENST00000374730 CADPSQ9ULU8 1353 aa7.23□□□□□ -1.25
USP48-202ENST00000374730 TREHO43280 583 aa7.23□□□□□ -1.25
USP48-202ENST00000374730 MAOBP27338 520 aa7.23□□□□□ -1.25
USP48-202ENST00000374730 MAP4P27816 1152 aaKnown RBP7.23□□□□□ -1.25
USP48-202ENST00000374730 MAPK1P28482 360 aa7.23□□□□□ -1.25
USP48-202ENST00000374730 CD97P48960 835 aa7.23□□□□□ -1.25
USP48-202ENST00000374730 GRM2Q14416 872 aa7.23□□□□□ -1.25
USP48-202ENST00000374730 DSC3Q14574 896 aa7.23□□□□□ -1.25
USP48-202ENST00000374730 GLIS3Q8NEA6 775 aa7.23□□□□□ -1.25
USP48-202ENST00000374730 SOX4Q06945 474 aaPredicted RBP7.22□□□□□ -1.25
USP48-202ENST00000374730 AP3B2Q13367 1082 aa7.22□□□□□ -1.25
USP48-202ENST00000374730 SGO2Q562F6 1265 aa7.22□□□□□ -1.25
USP48-202ENST00000374730 C2CD4AQ8NCU7 369 aaPredicted RBP7.22□□□□□ -1.25
USP48-202ENST00000374730 EPS8L3Q8TE67 593 aaKnown RBP7.22□□□□□ -1.25
USP48-202ENST00000374730 CORO1BQ9BR76 489 aa7.22□□□□□ -1.25
USP48-202ENST00000374730 NLRP2Q9NX02 1062 aa7.22□□□□□ -1.25
USP48-202ENST00000374730 COBLO75128 1261 aa7.21□□□□□ -1.26
USP48-202ENST00000374730 TGFB1P01137 390 aa7.21□□□□□ -1.26
USP48-202ENST00000374730 CTSBP07858 339 aa7.21□□□□□ -1.26
USP48-202ENST00000374730 ADH5P11766 374 aa7.21□□□□□ -1.26
USP48-202ENST00000374730 ENOX2Q16206 610 aaKnown RBP7.21□□□□□ -1.26
USP48-202ENST00000374730 YIPF2Q9BWQ6 316 aa7.21□□□□□ -1.26
USP48-202ENST00000374730 PCMTD2Q9NV79 361 aa7.21□□□□□ -1.26
USP48-202ENST00000374730 IVNS1ABPQ9Y6Y0 642 aa7.21□□□□□ -1.26
USP48-202ENST00000374730 SYNGAP1Q96PV0 1343 aa7.21□□□□□ -1.26
USP48-202ENST00000374730 KIAA1324LA8MWY0 1029 aaPredicted RBP7.2□□□□□ -1.26
USP48-202ENST00000374730 PATL2C9JE40 543 aaKnown RBP7.2□□□□□ -1.26
USP48-202ENST00000374730 XRCC5P13010 732 aaKnown RBP7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 181.7 ms