RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ADD1P35611 737 aaKnown RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 HS1BP3Q53T59 392 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 ZNF274Q96GC6 653 aaPredicted RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 NBPF3Q9H094 633 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 PRKAB2O43741 272 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 MBD4O95243 580 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 UVSSAQ2YD98 709 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 DNTTIP2Q5QJE6 756 aaKnown RBP12.12□□□□□ -0.47
LIMA1-201ENST00000341247 C3orf67Q6ZVT6 689 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 CYB5R4Q7L1T6 521 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 C8orf76Q96K31 380 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 AGXT2Q9BYV1 514 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 KIF3AQ9Y496 699 aa12.12□□□□□ -0.47
LIMA1-201ENST00000341247 ERVV-1B6SEH8 477 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 NFXL1Q6ZNB6 911 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 SPATA5Q8NB90 893 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 LPIN2Q92539 896 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 PDIA4P13667 645 aaKnown RBP12.11□□□□□ -0.47
LIMA1-201ENST00000341247 SLC5A1P13866 664 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 SASS6Q6UVJ0 657 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 ILDR1Q86SU0 546 aaPredicted RBP12.11□□□□□ -0.47
LIMA1-201ENST00000341247 CCDC82Q8N4S0 544 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 PHKBQ93100 1093 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 ZKSCAN3Q9BRR0 538 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 GOLPH3LQ9H4A5 285 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 ABCF2Q9UG63 623 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 HPS5Q9UPZ3 1129 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 SPATA31A5Q5VU36 1347 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 SPATA31A7Q8IWB4 1347 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 SPEF2Q9C093 1822 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 UBE2Q2LH0YL09 131 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 FAM98CQ17RN3 349 aaKnown RBP12.11□□□□□ -0.47
LIMA1-201ENST00000341247 CLSTN2Q9H4D0 955 aa12.11□□□□□ -0.47
LIMA1-201ENST00000341247 NAA16Q6N069 864 aaPredicted RBP12.1□□□□□ -0.47
LIMA1-201ENST00000341247 ZSCAN25Q6NSZ9 544 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 DDX19AQ9NUU7 478 aaKnown RBP12.1□□□□□ -0.47
LIMA1-201ENST00000341247 DDX60Q8IY21 1712 aaKnown RBP12.1□□□□□ -0.47
LIMA1-201ENST00000341247 OFD1O75665 1012 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 TTF1Q15361 905 aaPredicted RBP12.1□□□□□ -0.47
LIMA1-201ENST00000341247 SF3A1Q15459 793 aaKnown RBP12.1□□□□□ -0.47
LIMA1-201ENST00000341247 DRC7Q8IY82 874 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 FAM200AQ8TCP9 573 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 CBX8Q9HC52 389 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 SRCAPQ6ZRS2 3230 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 NEDD4P46934 1319 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 CAMTA2O94983 1202 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 GTF2E1P29083 439 aaPredicted RBP12.1□□□□□ -0.47
LIMA1-201ENST00000341247 IGHMBP2P38935 993 aaKnown RBP12.1□□□□□ -0.47
LIMA1-201ENST00000341247 FSIP1Q8NA03 581 aa12.1□□□□□ -0.47
LIMA1-201ENST00000341247 A0A1B0GVL5 298 aa12.09□□□□□ -0.47
LIMA1-201ENST00000341247 NAPBQ9H115 298 aa12.09□□□□□ -0.47
LIMA1-201ENST00000341247 LRP2BPQ9P2M1 347 aa12.09□□□□□ -0.47
LIMA1-201ENST00000341247 CLIC4Q9Y696 253 aa12.09□□□□□ -0.47
LIMA1-201ENST00000341247 SALL1Q9NSC2 1324 aa12.09□□□□□ -0.47
LIMA1-201ENST00000341247 CCDC73Q6ZRK6 1079 aa12.09□□□□□ -0.47
LIMA1-201ENST00000341247 UQCRFS1P1P0C7P4 283 aa12.09□□□□□ -0.47
LIMA1-201ENST00000341247 STK38Q15208 465 aa12.09□□□□□ -0.47
LIMA1-201ENST00000341247 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.09□□□□□ -0.47
LIMA1-201ENST00000341247 ZNF396Q96N95 335 aaPredicted RBP12.09□□□□□ -0.47
LIMA1-201ENST00000341247 STRBPQ96SI9 672 aaKnown RBP12.09□□□□□ -0.47
LIMA1-201ENST00000341247 MROH5Q6ZUA9 1318 aa12.08□□□□□ -0.47
LIMA1-201ENST00000341247 SMIM22K7EJ46 135 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 ZNF500O60304 480 aaPredicted RBP12.08□□□□□ -0.48
LIMA1-201ENST00000341247 GYG1P46976 350 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 ZNF165P49910 485 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 METAP2P50579 478 aaKnown RBP eCLIP12.08□□□□□ -0.48
LIMA1-201ENST00000341247 CHRNDQ07001 517 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 KIAA2012Q0VF49 1180 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 MAP3K12Q12852 859 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 CCDC152Q4G0S7 254 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 EPB41L4AQ9HCS5 686 aaPredicted RBP12.08□□□□□ -0.48
LIMA1-201ENST00000341247 KIF28PB7ZC32 967 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 FGFR2P21802 821 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 ARID4AP29374 1257 aaPredicted RBP12.08□□□□□ -0.48
LIMA1-201ENST00000341247 TDO2P48775 406 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 UBE3CQ15386 1083 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 CMTR1Q8N1G2 835 aaKnown RBP12.08□□□□□ -0.48
LIMA1-201ENST00000341247 TRIM5Q9C035 493 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 TACC3Q9Y6A5 838 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 MARCKSP29966 332 aaPredicted RBP12.08□□□□□ -0.48
LIMA1-201ENST00000341247 CDC27P30260 824 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 LCORLQ8N3X6 602 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 LINC00116Q8NCU8 138 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 RCOR1Q9UKL0 485 aa12.08□□□□□ -0.48
LIMA1-201ENST00000341247 ANGEL1Q9UNK9 670 aaKnown RBP12.08□□□□□ -0.48
LIMA1-201ENST00000341247 BCL9LQ86UU0 1499 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 KINO60870 393 aaKnown RBP12.07□□□□□ -0.48
LIMA1-201ENST00000341247 GNL2Q13823 731 aaKnown RBP12.07□□□□□ -0.48
LIMA1-201ENST00000341247 ERFEQ4G0M1 354 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 TMEM67Q5HYA8 995 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 IFNL3Q8IZI9 196 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 PCDHA7Q9UN72 937 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 JAG2Q9Y219 1238 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 TCRBV5S4A2TA0A5A2 114 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 DHX16O60231 1041 aaKnown RBP12.07□□□□□ -0.48
LIMA1-201ENST00000341247 C11orf57Q6ZUT1 292 aaPredicted RBP12.07□□□□□ -0.48
LIMA1-201ENST00000341247 SDR42E1Q8WUS8 393 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 C8orf37Q96NL8 207 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 SLC4A4Q9Y6R1 1079 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 CASZ1Q86V15 1759 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms