RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 GIMAP6Q6P9H5 292 aa10.79□□□□□ -0.68
TMEM39A-201ENST00000319172 TEX11Q8IYF3 940 aa10.79□□□□□ -0.68
TMEM39A-201ENST00000319172 TMTC2Q8N394 836 aa10.79□□□□□ -0.68
TMEM39A-201ENST00000319172 TM6SF1Q9BZW5 370 aa10.79□□□□□ -0.68
TMEM39A-201ENST00000319172 BRD2P25440 801 aaKnown RBP10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 KIF5BP33176 963 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 ITPK1Q13572 414 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 VPS72Q15906 364 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 OSBP2Q969R2 916 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 CDK5RAP3Q96JB5 506 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 PCMTD1Q96MG8 357 aaPredicted RBP10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 TPCN1Q9ULQ1 816 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 MAST3O60307 1309 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 SPATA31A5Q5VU36 1347 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 SPATA31A7Q8IWB4 1347 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 COL15A1P39059 1388 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 ZMYM1Q5SVZ6 1142 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 TBC1D9BQ66K14 1250 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 PDILTQ8N807 584 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 CCDC43Q96MW1 224 aaKnown RBP10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 ZSCAN16Q9H4T2 348 aaPredicted RBP10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 TPM3P06753 285 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 ZSCAN23Q3MJ62 389 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 WDR66Q8TBY9 1149 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 ZSWIM6Q9HCJ5 1215 aa10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 ANGEL1Q9UNK9 670 aaKnown RBP10.78□□□□□ -0.68
TMEM39A-201ENST00000319172 ARHGEF1Q92888 912 aaKnown RBP10.77□□□□□ -0.68
TMEM39A-201ENST00000319172 ANO8Q9HCE9 1232 aaPredicted RBP10.77□□□□□ -0.68
TMEM39A-201ENST00000319172 M0R2C6 588 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 BIN1O00499 593 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 EPB41L2O43491 1005 aaKnown RBP10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 MARCKSP29966 332 aaPredicted RBP10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 EIF5P55010 431 aaKnown RBP10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 GTF2IP78347 998 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 TRIM28Q13263 835 aaKnown RBP10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 ZNF772Q68DY9 489 aaPredicted RBP10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 ANKRD20A12PQ8NF67 263 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 ARID3AQ99856 593 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 PUS7LQ9H0K6 701 aaKnown RBP10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 ZNF804BA4D1E1 1349 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 CCDC194A0A1B0GVG4 234 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 H0YIN7 160 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 CCDC173Q0VFZ6 552 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 RABL6Q3YEC7 729 aaPredicted RBP10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 CLEC4GQ6UXB4 293 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 ZNF592Q92610 1267 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 KAZALD1Q96I82 304 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 EYA3Q99504 573 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 SHPRHQ149N8 1683 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 CHGBP05060 677 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 SSBP05455 408 aaKnown RBP eCLIP10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 RASGRF1Q13972 1273 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 UBE4AQ14139 1066 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 MAPKAPK5Q8IW41 473 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 NARFQ9UHQ1 456 aa10.77□□□□□ -0.69
TMEM39A-201ENST00000319172 USP17L12C9JPN9 530 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 USP17L21D6R901 530 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 MCAMP43121 646 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 MFSD14BQ5SR56 506 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 IFNL3Q8IZI9 196 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 OGFOD1Q8N543 542 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 GPR101Q96P66 508 aaPredicted RBP10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 PATL2C9JE40 543 aaKnown RBP10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 DHX8Q14562 1220 aaKnown RBP10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 RBM26Q5T8P6 1007 aaKnown RBP10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 ISM2Q6H9L7 571 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 CEP57L1Q8IYX8 460 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 CELF1Q92879 486 aaKnown RBP10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 PHKBQ93100 1093 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 PIH1D3Q9NQM4 214 aaKnown RBP10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 ATG9AQ7Z3C6 839 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 DACT1Q9NYF0 836 aa10.76□□□□□ -0.69
TMEM39A-201ENST00000319172 DOK7Q18PE1 504 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 NLGN1Q8N2Q7 840 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 VEZTQ9HBM0 779 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 CEP131Q9UPN4 1083 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 COL5A2P05997 1499 aaPredicted RBP10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 TPM1P09493 284 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 PLCG2P16885 1265 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 CDC37L1Q7L3B6 337 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 TGFBRAP1Q8WUH2 860 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 ZHX3Q9H4I2 956 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 PRKAB2O43741 272 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 SCARF1Q14162 830 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 TSR1Q2NL82 804 aaKnown RBP10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 AKNAD1Q5T1N1 836 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 CCDC39Q9UFE4 941 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 USP25Q9UHP3 1055 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 hCG_1642624A0A1W2PR95 340 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 EIF6P56537 245 aaKnown RBP10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 UBE3CQ15386 1083 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 LINC00116Q8NCU8 138 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 TMEM87BQ96K49 555 aa10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 DDX19AQ9NUU7 478 aaKnown RBP10.75□□□□□ -0.69
TMEM39A-201ENST00000319172 SERPINC1P01008 464 aa10.74□□□□□ -0.69
TMEM39A-201ENST00000319172 TPM2P07951 284 aa10.74□□□□□ -0.69
TMEM39A-201ENST00000319172 FAM47AQ5JRC9 791 aa10.74□□□□□ -0.69
TMEM39A-201ENST00000319172 BAG6P46379 1132 aa10.74□□□□□ -0.69
TMEM39A-201ENST00000319172 BARGINQ6ZT62 677 aa10.74□□□□□ -0.69
TMEM39A-201ENST00000319172 HEATR3Q7Z4Q2 680 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms