RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 MAPKBP1O60336 1514 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 A0A0U1RQG5 324 aaPredicted RBP6.16□□□□□ -1.42
CD44-202ENST00000278385 EREGO14944 169 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 EIF4EBP3O60516 100 aaPredicted RBP6.16□□□□□ -1.42
CD44-202ENST00000278385 CDC27P30260 824 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 PTPROQ16827 1216 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 SDE2Q6IQ49 451 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 TANGO6Q9C0B7 1094 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 LACRTQ9GZZ8 138 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 RASSF4Q9H2L5 321 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 SRA1Q9HD15 236 aaKnown RBP6.16□□□□□ -1.42
CD44-202ENST00000278385 KLHL42Q9P2K6 505 aa6.16□□□□□ -1.42
CD44-202ENST00000278385 PLB1Q6P1J6 1458 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 ABCC2Q92887 1545 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 hCG_2014768A0A024R1R8 64 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 PDE2AO00408 941 aaPredicted RBP6.15□□□□□ -1.42
CD44-202ENST00000278385 GADD45BO75293 160 aaPredicted RBP6.15□□□□□ -1.42
CD44-202ENST00000278385 MAP4K4O95819 1239 aaPredicted RBP6.15□□□□□ -1.42
CD44-202ENST00000278385 CENPBP07199 599 aaPredicted RBP6.15□□□□□ -1.42
CD44-202ENST00000278385 ANAPC15P60006 121 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 TAGLNQ01995 201 aaKnown RBP6.15□□□□□ -1.42
CD44-202ENST00000278385 TSNAXIP1Q2TAA8 658 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 CEP120Q8N960 986 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 KCNB2Q92953 911 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 FAM129BQ96TA1 746 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 OSMRQ99650 979 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 SALL4Q9UJQ4 1053 aa6.15□□□□□ -1.42
CD44-202ENST00000278385 C9orf172C9J069 976 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 NID1P14543 1247 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 ELNP15502 786 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 ATP11AP98196 1134 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 NRG1Q02297 640 aaPredicted RBP6.14□□□□□ -1.43
CD44-202ENST00000278385 TMC7Q7Z402 723 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 SMC5Q8IY18 1101 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 DDX54Q8TDD1 881 aaKnown RBP6.14□□□□□ -1.43
CD44-202ENST00000278385 ASAP3Q8TDY4 903 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 ALKBH8Q96BT7 664 aaKnown RBP6.14□□□□□ -1.43
CD44-202ENST00000278385 TRIM11Q96F44 468 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 PLCD4Q9BRC7 762 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 USP21Q9UK80 565 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 TRIM33Q9UPN9 1127 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 TBX22Q9Y458 520 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 ASXL2Q76L83 1435 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 ADCY10Q96PN6 1610 aa6.14□□□□□ -1.43
CD44-202ENST00000278385 A0A0A0MRY4 1105 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 EIF1AYO14602 144 aaKnown RBP6.13□□□□□ -1.43
CD44-202ENST00000278385 PARNO95453 639 aaKnown RBP6.13□□□□□ -1.43
CD44-202ENST00000278385 MAPK8P45983 427 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 HDLBPQ00341 1268 aaKnown RBP6.13□□□□□ -1.43
CD44-202ENST00000278385 ECM1Q16610 540 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 CCDC144BQ3MJ40 725 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 COL13A1Q5TAT6 717 aaPredicted RBP6.13□□□□□ -1.43
CD44-202ENST00000278385 SPTY2D1Q68D10 685 aaPredicted RBP6.13□□□□□ -1.43
CD44-202ENST00000278385 DCAF5Q96JK2 942 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 ASB16Q96NS5 453 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 CSRNP1Q96S65 589 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 BRINP2Q9C0B6 783 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 EHD4Q9H223 541 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 CHRDQ9H2X0 955 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 SUV39H2Q9H5I1 410 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 DZANK1Q9NVP4 752 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 TRAK1Q9UPV9 953 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 KDM5BQ9UGL1 1544 aa6.13□□□□□ -1.43
CD44-202ENST00000278385 PEX14O75381 377 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 POLR3DP05423 398 aaPredicted RBP6.12□□□□□ -1.43
CD44-202ENST00000278385 HOXB4P17483 251 aaPredicted RBP6.12□□□□□ -1.43
CD44-202ENST00000278385 CDC25BP30305 580 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 ITGAEP38570 1179 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 RAD51AP2Q09MP3 1159 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 ORC1Q13415 861 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 GALNT12Q8IXK2 581 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 TMEM102Q8N9M5 508 aaPredicted RBP6.12□□□□□ -1.43
CD44-202ENST00000278385 BSNDQ8WZ55 320 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 BACH2Q9BYV9 841 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 UBA5Q9GZZ9 404 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 LIN7BQ9HAP6 207 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 ZFYVE1Q9HBF4 777 aa6.12□□□□□ -1.43
CD44-202ENST00000278385 KIAA0556O60303 1618 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 CCDC194A0A1B0GVG4 234 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 HMGB1P1B2RPK0 211 aaPredicted RBP6.11□□□□□ -1.43
CD44-202ENST00000278385 FAM229AH3BQW9 127 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 SCAMP3O14828 347 aaKnown RBP6.11□□□□□ -1.43
CD44-202ENST00000278385 IGHA1P01876 353 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 IBSPP21815 317 aaPredicted RBP6.11□□□□□ -1.43
CD44-202ENST00000278385 HNRNPUQ00839 825 aaKnown RBP eCLIP6.11□□□□□ -1.43
CD44-202ENST00000278385 RALBP1Q15311 655 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 ALG1LQ6GMV1 187 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 APBB1IPQ7Z5R6 666 aaPredicted RBP6.11□□□□□ -1.43
CD44-202ENST00000278385 FBXO11Q86XK2 927 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 FMR1NBQ8N0W7 255 aaPredicted RBP6.11□□□□□ -1.43
CD44-202ENST00000278385 SLC43A3Q8NBI5 491 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 DHX38Q92620 1227 aaKnown RBP6.11□□□□□ -1.43
CD44-202ENST00000278385 CCDC74AQ96AQ1 378 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 ARMC5Q96C12 935 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 CCDC136Q96JN2 1154 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 POP1Q99575 1024 aaKnown RBP6.11□□□□□ -1.43
CD44-202ENST00000278385 ZKSCAN3Q9BRR0 538 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 PRKAG2Q9UGJ0 569 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 FAN1Q9Y2M0 1017 aa6.11□□□□□ -1.43
CD44-202ENST00000278385 PNMA6FA0A0J9YX94 578 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms