RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 KIAA0754O94854 1291 aa5.27□□□□□ -1.57
VPS13C-201ENST00000249837 PUS3Q9BZE2 481 aaKnown RBP5.27□□□□□ -1.57
VPS13C-201ENST00000249837 KCNJ14Q9UNX9 436 aa5.27□□□□□ -1.57
VPS13C-201ENST00000249837 LRRC24Q50LG9 513 aa5.27□□□□□ -1.57
VPS13C-201ENST00000249837 GUCA1BQ9UMX6 200 aa5.27□□□□□ -1.57
VPS13C-201ENST00000249837 CPSF1Q10570 1443 aaKnown RBP5.27□□□□□ -1.57
VPS13C-201ENST00000249837 GPAA1O43292 621 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CT47A1Q5JQC4 288 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 KANK3Q6NY19 840 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 FAM107BQ9H098 131 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 KDRP35968 1356 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 TULP4Q9NRJ4 1543 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CUTAO60888 179 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 ADD1P35611 737 aaKnown RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 ZAP70P43403 619 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 ODF2Q5BJF6 829 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CABP5Q9NP86 173 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 HECW2Q9P2P5 1572 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 IQSEC2Q5JU85 1478 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 PRDM1O75626 825 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 DDIT3P35638 169 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CTR9Q6PD62 1173 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CACNA2D4Q7Z3S7 1137 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 MAP4K1Q92918 833 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 ACSBG1Q96GR2 724 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 RNF41Q9H4P4 317 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 SERTAD1Q9UHV2 236 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 RCOR1Q9UKL0 485 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.26□□□□□ -1.572e-6■■□□□ 13.1
VPS13C-201ENST00000249837 HSPD1P10809 573 aaKnown RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 NDUFA8P51970 172 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 HAUS7Q99871 368 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 SPA17Q15506 151 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 DNAJC21Q5F1R6 531 aaKnown RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CLEC17AQ6ZS10 378 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CAPZA3Q96KX2 299 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 STAT6P42226 847 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 KIAA1468Q9P260 1216 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 TCEAL9Q9UHQ7 104 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 VIRMAQ69YN4 1812 aaKnown RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 PAFAH1B1P43034 410 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 TTF1Q15361 905 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 TTC14Q96N46 770 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 PCDHA7Q9UN72 937 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 ANGEL1Q9UNK9 670 aaKnown RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 MYO3AQ8NEV4 1616 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CTAGE9A4FU28 777 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 PPARDQ03181 441 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 RESTQ13127 1097 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 PNOCQ13519 176 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 TRIM47Q96LD4 638 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 PHACTR2O75167 634 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 ADAMTS2O95450 1211 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 DNAJC10Q8IXB1 793 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 ESR2Q92731 530 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 KRT23Q9C075 422 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 LRRC8AQ8IWT6 810 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 CMTR1Q8N1G2 835 aaKnown RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 IGSF22Q8N9C0 903 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 V9GY48 417 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 ZNF827Q17R98 1081 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 DCAF5Q96JK2 942 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 PDLIM2Q96JY6 352 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 BMP2KQ9NSY1 1161 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-201ENST00000249837 NFE2L3Q9Y4A8 694 aa5.26□□□□□ -1.57
VPS13C-201ENST00000249837 MYO1BO43795 1136 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 CCDC96Q2M329 555 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 IQCEQ6IPM2 695 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 SIRT1Q96EB6 747 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 CLIC4Q9Y696 253 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 AKR1B15C9JRZ8 316 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-201ENST00000249837 AKR1B10O60218 316 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 CCDC175P0C221 793 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 GABPB1Q06547 395 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-201ENST00000249837 HEATR3Q7Z4Q2 680 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 VPS16Q9H269 839 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 COPRSQ9NQ92 184 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 JADE2Q9NQC1 790 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 CAMSAP1Q5T5Y3 1602 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 NEO1Q92859 1461 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 NLRP1Q9C000 1473 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 PFKFB1P16118 471 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 TXLNBQ8N3L3 684 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 LUC7LQ9NQ29 371 aaKnown RBP5.25□□□□□ -1.57
VPS13C-201ENST00000249837 SEPT11Q9NVA2 429 aaKnown RBP5.25□□□□□ -1.57
VPS13C-201ENST00000249837 BCCIPQ9P287 314 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS13C-201ENST00000249837 SETBP1Q9Y6X0 1596 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 TMEM2Q9UHN6 1383 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 MAGEB6P1A0A0J9YX57 407 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 SASH1O94885 1247 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 ZFYVE27Q5T4F4 411 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 ARMT1Q9H993 441 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 CTNND2Q9UQB3 1225 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 NOP2P46087 812 aaKnown RBP5.25□□□□□ -1.57
VPS13C-201ENST00000249837 ARID5AQ03989 594 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 CTDSPL2Q05D32 466 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 EPHA10Q5JZY3 1008 aa5.25□□□□□ -1.57
VPS13C-201ENST00000249837 DIS3L2Q8IYB7 885 aaKnown RBP5.25□□□□□ -1.57
VPS13C-201ENST00000249837 GJB4Q9NTQ9 266 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms