RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 KCTD18Q6PI47 426 aaPredicted RBP8.67□□□□□ -1.02
VPS39-214ENST00000614932 LINC00346Q8IVM7 164 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 SUMF1Q8NBK3 374 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 OR5A1Q8NGJ0 315 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 MAFAQ8NHW3 353 aaPredicted RBP8.67□□□□□ -1.02
VPS39-214ENST00000614932 SCGB1C1Q8TD33 95 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 DAZLQ92904 295 aaKnown RBP8.67□□□□□ -1.02
VPS39-214ENST00000614932 ST6GALNAC6Q969X2 333 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 GMPPAQ96IJ6 420 aaPredicted RBP8.67□□□□□ -1.02
VPS39-214ENST00000614932 CYYR1Q96J86 154 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 SPATA25Q9BR10 227 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 JKAMPQ9P055 326 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 B3GALT1Q9Y5Z6 326 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 CACNA1EQ15878 2313 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 TEX48A0A1B0GUV7 120 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 A0A1W2PQM1 296 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 PSMB11A5LHX3 300 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 RENP00797 406 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 BGLAPP02818 100 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 ISG15P05161 165 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 HLA-DOBP13765 273 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 SSBP2P81877 361 aaPredicted RBP8.67□□□□□ -1.02
VPS39-214ENST00000614932 TLE1Q04724 770 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 SLC25A34Q6PIV7 304 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 OR5P3Q8WZ94 311 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 ABHD14BQ96IU4 210 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 GPER1Q99527 375 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 TMEM59Q9BXS4 323 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 SLC39A9Q9NUM3 307 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 WNT16Q9UBV4 365 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 TMEM189A5PLL7 270 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 H3BML4 177 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 F2RL2O00254 374 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 GLI4P10075 376 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 PNMTP11086 282 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 TSPO2Q5TGU0 170 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 GLIPR1L1Q6UWM5 242 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 OR2K2Q8NGT1 345 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 NEIL1Q96FI4 390 aaPredicted RBP8.66□□□□□ -1.02
VPS39-214ENST00000614932 ABHD17AQ96GS6 310 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 BANF2Q9H503 90 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 SELENOKQ9Y6D0 94 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 C9orf118A6NHY6 69 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 SCRG1O75711 98 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 ASAH2BP0C7U1 165 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 SERF2P84101 59 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 ZNF90Q03938 601 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 RCHY1Q96PM5 261 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 SPXQ9BT56 116 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 MRPL16Q9NX20 251 aaKnown RBP8.66□□□□□ -1.02
VPS39-214ENST00000614932 TP73-AS1Q9UF72 201 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 EMC9Q9Y3B6 208 aa8.66□□□□□ -1.02
VPS39-214ENST00000614932 CLDN1O95832 211 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 PF4V1P10720 104 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 GP1BBP13224 206 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 PGCP20142 388 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 Q56UQ5 140 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 TMEM164Q5U3C3 297 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 LYSMD4Q5XG99 296 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 ZNF324BQ6AW86 544 aaPredicted RBP8.65□□□□□ -1.02
VPS39-214ENST00000614932 SPIN2AQ99865 258 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 SPIN2BQ9BPZ2 258 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 COMMD5Q9GZQ3 224 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 R4GMQ9 66 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 ASPMQ8IZT6 3477 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 SDK2Q58EX2 2172 aa8.65□□□□□ -1.02
VPS39-214ENST00000614932 TMED7-TICAM2A0A0A6YYA0 188 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 TRBV9A0A0B4J1U6 114 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 MDFIC2A0A1B0GVS7 189 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 SNURFLB1AK76 121 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 NPIPA5E9PKD4 350 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 NPIPA3F8WFD2 350 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 TMPRSS2O15393 492 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 SLC16A7O60669 478 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 SERPINE2P07093 398 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 ARL3P36405 182 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 CA7P43166 264 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 FAM19A2Q8N3H0 131 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 LRRC75AQ8NAA5 344 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 OCIAD1Q9NX40 245 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 NPIPA1Q9UND3 350 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 DOCK11Q5JSL3 2073 aa8.65□□□□□ -1.03
VPS39-214ENST00000614932 ANKRD30BLA7E2S9 258 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 J3QR89 54 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 PHF1O43189 567 aaPredicted RBP8.64□□□□□ -1.03
VPS39-214ENST00000614932 CNIH1O95406 144 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 TMEM50AO95807 157 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 IFI6P09912 130 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 NTF3P20783 257 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 GATA3P23771 443 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 NPY1RP25929 384 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 IER3P46695 156 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 SEC11AP67812 179 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 HIST1H1AQ02539 215 aaPredicted RBP8.64□□□□□ -1.03
VPS39-214ENST00000614932 ACKR1Q16570 336 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 BRICD5Q6PL45 260 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 JMJD8Q96S16 334 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 ULBP2Q9BZM5 246 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 IGKV1D-8A0A087WSZ0 117 aa8.64□□□□□ -1.03
VPS39-214ENST00000614932 LRP5LA4QPB2 252 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms