RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 LYL1P12980 280 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 AADACP22760 399 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 MAP2K4P45985 399 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 DYRK1AQ13627 763 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 Q6ZS49 121 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 BVESQ8NE79 360 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 OR9G4Q8NGQ1 327 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 DDB2Q92466 427 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 USMG5Q96IX5 58 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 RSRP1Q9BUV0 290 aa13.07□□□□□ -0.32
CLN3-216ENST00000565316 ERICH4A6NGS2 130 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 ANKRD65E5RJM6 399 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 SHOXO15266 292 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 HIST1H1DP16402 221 aaKnown RBP13.06□□□□□ -0.32
CLN3-216ENST00000565316 GNB3P16520 340 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 RAB6AP20340 208 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 CBX3Q13185 183 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 RTL8BQ17RB0 113 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 SGPP2Q8IWX5 399 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 TEX45Q8NA69 505 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 THAP7Q9BT49 309 aaPredicted RBP13.06□□□□□ -0.32
CLN3-216ENST00000565316 CCDC90BQ9GZT6 254 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 SIGLEC8Q9NYZ4 499 aa13.06□□□□□ -0.32
CLN3-216ENST00000565316 PEF1Q9UBV8 284 aaKnown RBP13.06□□□□□ -0.32
CLN3-216ENST00000565316 ZNF230Q9UIE0 474 aaPredicted RBP13.06□□□□□ -0.32
CLN3-216ENST00000565316 SHISA3A0PJX4 238 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 IFITM5A6NNB3 132 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 H0Y980 276 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 PDCD5O14737 125 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 RBMXL2O75526 392 aaKnown RBP13.05□□□□□ -0.32
CLN3-216ENST00000565316 GADD45AP24522 165 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 DUTP33316 252 aaKnown RBP13.05□□□□□ -0.32
CLN3-216ENST00000565316 SYNJ2BPP57105 145 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 OR10A3P58181 314 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 UBE2KP61086 200 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 TBCEQ15813 527 aaPredicted RBP13.05□□□□□ -0.32
CLN3-216ENST00000565316 SSX1Q16384 188 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 PRSS8Q16651 343 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 H1FOOQ8IZA3 346 aaPredicted RBP13.05□□□□□ -0.32
CLN3-216ENST00000565316 ADAD2Q8NCV1 583 aaKnown RBP13.05□□□□□ -0.32
CLN3-216ENST00000565316 MAFIPQ8WZ33 124 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 ADTRPQ96IZ2 230 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 CENPOQ9BU64 300 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 EDA2RQ9HAV5 297 aa13.05□□□□□ -0.32
CLN3-216ENST00000565316 TNCP24821 2201 aa13.04□□□□□ -0.32
CLN3-216ENST00000565316 MSGN1A6NI15 193 aa13.04□□□□□ -0.32
CLN3-216ENST00000565316 TRBV12-3P01733 135 aa13.04□□□□□ -0.32
CLN3-216ENST00000565316 CSN3P07498 182 aa13.04□□□□□ -0.32
CLN3-216ENST00000565316 ZNF367Q7RTV3 350 aa13.04□□□□□ -0.32
CLN3-216ENST00000565316 COA4Q9NYJ1 87 aa13.04□□□□□ -0.32
CLN3-216ENST00000565316 IGKV1D-8A0A087WSZ0 117 aa13.03□□□□□ -0.32
CLN3-216ENST00000565316 LINC00473A8K010 186 aa13.03□□□□□ -0.32
CLN3-216ENST00000565316 MECP2P51608 486 aaKnown RBP13.03□□□□□ -0.32
CLN3-216ENST00000565316 DEFA5Q01523 94 aa13.03□□□□□ -0.32
CLN3-216ENST00000565316 VMA21Q3ZAQ7 101 aa13.03□□□□□ -0.32
CLN3-216ENST00000565316 GINS4Q9BRT9 223 aa13.03□□□□□ -0.32
CLN3-216ENST00000565316 NDUFB11Q9NX14 153 aa13.03□□□□□ -0.32
CLN3-216ENST00000565316 ADAM30Q9UKF2 790 aa13.03□□□□□ -0.32
CLN3-216ENST00000565316 A0A075B6Q4 140 aa13.02□□□□□ -0.33
CLN3-216ENST00000565316 TRDV1A0A1B0GX56 115 aa13.02□□□□□ -0.33
CLN3-216ENST00000565316 METTL21EPA6NDL7 271 aa13.02□□□□□ -0.33
CLN3-216ENST00000565316 OR2A4O95047 310 aa13.02□□□□□ -0.33
CLN3-216ENST00000565316 OR9G9P0C7N8 305 aa13.02□□□□□ -0.33
CLN3-216ENST00000565316 DTYMKP23919 212 aa13.02□□□□□ -0.33
CLN3-216ENST00000565316 TATDN3Q17R31 274 aa13.02□□□□□ -0.33
CLN3-216ENST00000565316 OSR1Q8TAX0 266 aaPredicted RBP13.02□□□□□ -0.33
CLN3-216ENST00000565316 SRSF12Q8WXF0 261 aaKnown RBP13.02□□□□□ -0.33
CLN3-216ENST00000565316 RBM7Q9Y580 266 aaKnown RBP13.02□□□□□ -0.33
CLN3-216ENST00000565316 TRBV9A0A0B4J1U6 114 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 A0A0B4J203 849 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 CRYZL1O95825 349 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 APELAP0DMC3 54 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 RAB3BP20337 219 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 GALP22466 123 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 TALDO1P37837 337 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 TNXAQ16473 311 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 HAGHQ16775 308 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 IDO2Q6ZQW0 420 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 NR2C2APQ86WQ0 139 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 Q8N402 240 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 SNAPC3Q92966 411 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 PHB2Q99623 299 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 PALMDQ9NP74 551 aa13.01□□□□□ -0.33
CLN3-216ENST00000565316 LCE6AA0A183 80 aa13□□□□□ -0.33
CLN3-216ENST00000565316 FAM223BA6NKX1 122 aa13□□□□□ -0.33
CLN3-216ENST00000565316 MYL9P24844 172 aa13□□□□□ -0.33
CLN3-216ENST00000565316 ZNF45Q02386 682 aa13□□□□□ -0.33
CLN3-216ENST00000565316 ARFRP1Q13795 201 aa13□□□□□ -0.33
CLN3-216ENST00000565316 ARL6IP1Q15041 203 aa13□□□□□ -0.33
CLN3-216ENST00000565316 RPEL1Q2QD12 228 aa13□□□□□ -0.33
CLN3-216ENST00000565316 LCN12Q6JVE5 192 aa13□□□□□ -0.33
CLN3-216ENST00000565316 FAM223AQ8IWN6 122 aa13□□□□□ -0.33
CLN3-216ENST00000565316 OR2K2Q8NGT1 345 aa13□□□□□ -0.33
CLN3-216ENST00000565316 SPATA25Q9BR10 227 aa13□□□□□ -0.33
CLN3-216ENST00000565316 ZNF430Q9H8G1 570 aaPredicted RBP13□□□□□ -0.33
CLN3-216ENST00000565316 AKIP1Q9NQ31 210 aa13□□□□□ -0.33
CLN3-216ENST00000565316 ELF5Q9UKW6 265 aaPredicted RBP13□□□□□ -0.33
CLN3-216ENST00000565316 IZUMO1RA6ND01 250 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 BMPR1BO00238 502 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 AIREO43918 545 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms