RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 AIFM2Q9BRQ8 373 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 SLC35B3Q9H1N7 401 aa13.49□□□□□ -0.25
COL4A1-204ENST00000543140 TRGV8A0A0C4DH27 118 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 EIF3GO75821 320 aaKnown RBP eCLIP13.48□□□□□ -0.25
COL4A1-204ENST00000543140 PLA2G5P39877 138 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 CEBPGP53567 150 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 ERVFRD-1P60508 538 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 ZNF788Q6ZQV5 615 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 GFOD1Q9NXC2 390 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 RELNP78509 3460 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 ZZEF1O43149 2961 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 M0R036 132 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 GFRA3O60609 400 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 MMP23AO75900 390 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 NDUFB7P17568 137 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 GNG10P50151 68 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 ELLP55199 621 aaPredicted RBP13.48□□□□□ -0.25
COL4A1-204ENST00000543140 TET2Q6N021 2002 aaPredicted RBP13.48□□□□□ -0.25
COL4A1-204ENST00000543140 NEUROG1Q92886 237 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 WDR61Q9GZS3 305 aaKnown RBP13.48□□□□□ -0.25
COL4A1-204ENST00000543140 RAXQ9Y2V3 346 aa13.48□□□□□ -0.25
COL4A1-204ENST00000543140 HPRT1P00492 218 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 IFNA17P01571 189 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 SNRNP70P08621 437 aaKnown RBP13.47□□□□□ -0.25
COL4A1-204ENST00000543140 FBP1P09467 338 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 TNFRSF1AP19438 455 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 TLE1Q04724 770 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 RBPJQ06330 500 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 S1PR3Q99500 378 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 RPS10P5Q9NQ39 176 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 SAA2-SAA4A0A096LPE2 208 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 SAA2P0DJI9 122 aaPredicted RBP13.47□□□□□ -0.25
COL4A1-204ENST00000543140 NHLH1Q02575 133 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 PRAMEF5Q5TYX0 476 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 LCN15Q6UWW0 184 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 LYG1Q8N1E2 194 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 KIAA1456Q9P272 454 aa13.47□□□□□ -0.25
COL4A1-204ENST00000543140 PPIHO43447 177 aaKnown RBP13.46□□□□□ -0.25
COL4A1-204ENST00000543140 FGF8P55075 233 aaPredicted RBP13.46□□□□□ -0.25
COL4A1-204ENST00000543140 TMPRSS3P57727 454 aa13.46□□□□□ -0.25
COL4A1-204ENST00000543140 AWAT1Q58HT5 328 aa13.46□□□□□ -0.25
COL4A1-204ENST00000543140 CCL17Q92583 94 aa13.46□□□□□ -0.25
COL4A1-204ENST00000543140 TAF15Q92804 592 aaKnown RBP eCLIP13.46□□□□□ -0.25
COL4A1-204ENST00000543140 SAV1Q9H4B6 383 aaPredicted RBP13.46□□□□□ -0.25
COL4A1-204ENST00000543140 SAP30LQ9HAJ7 183 aa13.46□□□□□ -0.25
COL4A1-204ENST00000543140 ZNRD1Q9P1U0 126 aa13.46□□□□□ -0.25
COL4A1-204ENST00000543140 PRELID3BQ9Y3B1 194 aa13.46□□□□□ -0.25
COL4A1-204ENST00000543140 TRAV3A0A0B4J244 114 aa13.46□□□□□ -0.26
COL4A1-204ENST00000543140 BTBD17A6NE02 478 aa13.46□□□□□ -0.26
COL4A1-204ENST00000543140 DAOP14920 347 aa13.46□□□□□ -0.26
COL4A1-204ENST00000543140 SP5Q6BEB4 398 aaPredicted RBP13.46□□□□□ -0.26
COL4A1-204ENST00000543140 SSX7Q7RTT5 188 aa13.46□□□□□ -0.26
COL4A1-204ENST00000543140 RXFP4Q8TDU9 374 aa13.46□□□□□ -0.26
COL4A1-204ENST00000543140 A0A1B0GW64 132 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 ZNF726P1Q15940 193 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 SOHLH1Q5JUK2 328 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 TEX36Q5VZQ5 186 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 DPPA3Q6W0C5 159 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 OR4A16Q8NH70 328 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 PSMG3Q9BT73 122 aaPredicted RBP13.45□□□□□ -0.26
COL4A1-204ENST00000543140 NCOR1P1Q9H4R4 102 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 ARFGEF3Q5TH69 2177 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 PMS2P5A8MQ11 134 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 RAB7AP51149 207 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 HFEQ30201 348 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 OR10P1Q8NGE3 313 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 GNG13Q9P2W3 67 aa13.45□□□□□ -0.26
COL4A1-204ENST00000543140 PUS1Q9Y606 427 aaKnown RBP eCLIP13.45□□□□□ -0.26
COL4A1-204ENST00000543140 C7orf77A4D0Y5 90 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 RAB2AP61019 212 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 ERVK-16P61578 105 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 ICAM4Q14773 271 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 CLDND2Q8NHS1 167 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 RCC1LQ96I51 464 aaKnown RBP13.44□□□□□ -0.26
COL4A1-204ENST00000543140 CIB3Q96Q77 187 aaPredicted RBP13.44□□□□□ -0.26
COL4A1-204ENST00000543140 CLCC1Q96S66 551 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 IDI2-AS1Q9NZ38 188 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 TPRP12270 2363 aaKnown RBP13.44□□□□□ -0.26
COL4A1-204ENST00000543140 H7C2Y5 167 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 HBE1P02100 147 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 MRPS11P82912 194 aaKnown RBP13.44□□□□□ -0.26
COL4A1-204ENST00000543140 DDB2Q92466 427 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 VKORC1Q9BQB6 163 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 TMEM140Q9NV12 185 aa13.44□□□□□ -0.26
COL4A1-204ENST00000543140 SLC25A10Q9UBX3 287 aaPredicted RBP13.44□□□□□ -0.26
COL4A1-204ENST00000543140 SHISA9B4DS77 424 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 SCAF4O95104 1147 aaKnown RBP13.43□□□□□ -0.26
COL4A1-204ENST00000543140 NQO2P16083 231 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 SERF2P84101 59 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 TFF3Q07654 80 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 DIRC2Q96SL1 478 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 ZNF251Q9BRH9 671 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 EGLN1Q9GZT9 426 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 RAB9BQ9NP90 201 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 TRAV38-1A0A0B4J264 116 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 NKX6-3A6NJ46 265 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 ZFP92A6NM28 416 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 ZNF729A6NN14 1252 aaPredicted RBP13.43□□□□□ -0.26
COL4A1-204ENST00000543140 E7EQL1 145 aa13.43□□□□□ -0.26
COL4A1-204ENST00000543140 OR8U8P0C7N1 319 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms