RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 YPEL4Q96NS1 127 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 ACTR3CQ9C0K3 210 aaPredicted RBP12.32□□□□□ -0.44
NUP54-217ENST00000514987 ZNF665Q9H7R5 613 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 GFOD1Q9NXC2 390 aa12.32□□□□□ -0.44
NUP54-217ENST00000514987 KBTBD11-OT1A0A1B0GTJ5 212 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 MPDU1O75352 247 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 IGHV1-46P01743 117 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 IRF2P14316 349 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 AKR1D1P51857 326 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 ELLP55199 621 aaPredicted RBP12.31□□□□□ -0.44
NUP54-217ENST00000514987 RAB11AP62491 216 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 STUMQ69YW2 141 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 TMEM108Q6UXF1 575 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 ZFP82Q8N141 532 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 RPRMLQ8N4K4 120 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 ZNRF1Q8ND25 227 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 OR4S2Q8NH73 311 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 QTRT1Q9BXR0 403 aaKnown RBP12.31□□□□□ -0.44
NUP54-217ENST00000514987 IFI27L2Q9H2X8 130 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 GCM1Q9NP62 436 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 MANBALQ9NQG1 85 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 TMEM242Q9NWH2 141 aa12.31□□□□□ -0.44
NUP54-217ENST00000514987 CYB5BO43169 146 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 PROP1O75360 226 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 MDKP21741 143 aaPredicted RBP12.3□□□□□ -0.44
NUP54-217ENST00000514987 THBS3P49746 956 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 FAM90A2PQ658T7 463 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 HEPN1Q6WQI6 88 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 RPP25LQ8N5L8 163 aaKnown RBP12.3□□□□□ -0.44
NUP54-217ENST00000514987 OR10G9Q8NGN4 311 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 OR10G7Q8NGN6 311 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 C2CD4CQ8TF44 421 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 CA5BP1Q8WTZ4 195 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 CORO2AQ92828 525 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 ZDHHC16Q969W1 377 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 LINC00574Q9H8X3 128 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 ZNF729A6NN14 1252 aaPredicted RBP12.3□□□□□ -0.44
NUP54-217ENST00000514987 C16orf97H3BN30 126 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 FBP1P09467 338 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 PSMB3P49720 205 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 FAM27E3Q08E93 113 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 C17orf58Q2M2W7 97 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 ACOT6Q3I5F7 207 aaPredicted RBP12.3□□□□□ -0.44
NUP54-217ENST00000514987 FFAR4Q5NUL3 377 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 DDB2Q92466 427 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 NPCDR1Q9BY65 106 aa12.3□□□□□ -0.44
NUP54-217ENST00000514987 hCG_1809904A0A1W2PP81 198 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 A0A1W2PR64 198 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 A0A1W2PRV1 198 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 C5orf52A6NGY3 159 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 C15orf62A8K5M9 175 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 TMEM250H0YL14 139 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 S100A8P05109 93 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 CD55P08174 381 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 OR9G9P0C7N8 305 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 TNFRSF1AP19438 455 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 BMP5P22003 454 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 RPL35P42766 123 aaKnown RBP12.29□□□□□ -0.44
NUP54-217ENST00000514987 FGF8P55075 233 aaPredicted RBP12.29□□□□□ -0.44
NUP54-217ENST00000514987 SPRNQ5BIV9 151 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 TEX36Q5VZQ5 186 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 ADAM5Q6NVV9 412 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 ACSM6Q6P461 480 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 METTL1Q9UBP6 276 aaKnown RBP12.29□□□□□ -0.44
NUP54-217ENST00000514987 WDR83OSQ9Y284 106 aa12.29□□□□□ -0.44
NUP54-217ENST00000514987 TRGV8A0A0C4DH27 118 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 VSTM5A8MXK1 200 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 K7EM74 188 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 UBE2CO00762 179 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 TGOLN2O43493 480 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 OR2B8PP59922 312 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 MEF2BQ02080 365 aaPredicted RBP12.28□□□□□ -0.44
NUP54-217ENST00000514987 TMEM249Q2WGJ8 235 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 RPL39P5Q59GN2 51 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 ZNF788Q6ZQV5 615 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 SSX7Q7RTT5 188 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 DOLPP1Q86YN1 238 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 OR10A7Q8NGE5 316 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 GAFA1Q96PS6 74 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 CTDSP1Q9GZU7 261 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 SDF2L1Q9HCN8 221 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 HEYLQ9NQ87 328 aaPredicted RBP12.28□□□□□ -0.44
NUP54-217ENST00000514987 KCNIP2Q9NS61 270 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 IDI2-AS1Q9NZ38 188 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 USF3Q68DE3 2245 aa12.28□□□□□ -0.44
NUP54-217ENST00000514987 EP300Q09472 2414 aaPredicted RBP12.28□□□□□ -0.44
NUP54-217ENST00000514987 TTC28Q96AY4 2481 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 NKX6-3A6NJ46 265 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 ZNF98A6NK75 572 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 CD1BP29016 333 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 ZNF134P52741 427 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 TMPRSS3P57727 454 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 SNRPEP62304 92 aaKnown RBP12.27□□□□□ -0.44
NUP54-217ENST00000514987 CT45A1Q5HYN5 189 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 CT45A3Q8NHU0 189 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 TCEAL7Q9BRU2 100 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 NAT8Q9UHE5 227 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 CACNA1DQ01668 2161 aa12.27□□□□□ -0.44
NUP54-217ENST00000514987 A0A0G2JNJ9 132 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 hADV38S2A0JD32 116 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms