RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 BTNL3Q6UXE8 466 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 C15orf54Q8N8G6 183 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 RFESDQ8TAC1 157 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 C5orf30Q96GV9 206 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 SAV1Q9H4B6 383 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-202ENST00000374876 IGHV3-43A0A0B4J1X8 118 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 MEX3AA1L020 520 aaKnown RBP12.88□□□□□ -0.35
CCDC40-202ENST00000374876 IGHV3-43DP0DP04 118 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 PAX6P26367 422 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 TNFRSF9Q07011 255 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 ARL16Q0P5N6 197 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 EIF4EBP1Q13541 118 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-202ENST00000374876 HAGHQ16775 308 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 LRP11Q86VZ4 500 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 ZNF525Q8N782 197 aa12.88□□□□□ -0.35
CCDC40-202ENST00000374876 RBMXL1Q96E39 390 aaKnown RBP12.88□□□□□ -0.35
CCDC40-202ENST00000374876 UNKLQ9H9P5 680 aaKnown RBP12.88□□□□□ -0.35
CCDC40-202ENST00000374876 RSG1Q9BU20 258 aa12.87□□□□□ -0.35
CCDC40-202ENST00000374876 RBKSQ9H477 322 aa12.87□□□□□ -0.35
CCDC40-202ENST00000374876 HSPB7Q9UBY9 170 aa12.87□□□□□ -0.35
CCDC40-202ENST00000374876 LAMP3Q9UQV4 416 aa12.87□□□□□ -0.35
CCDC40-202ENST00000374876 DSCAMO60469 2012 aa12.87□□□□□ -0.35
CCDC40-202ENST00000374876 PDZD2O15018 2839 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 C17orf98A8MV24 154 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 SRRM5B3KS81 715 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 S1PR2O95136 353 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 SOD3P08294 240 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 ADH4P08319 380 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 EGR1P18146 543 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 RAB13P51153 203 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 PAX5Q02548 391 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 RHEBQ15382 184 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 MSMPQ1L6U9 139 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 HAPLN4Q86UW8 402 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 TCTEX1D1Q8N7M0 179 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 HIPK2Q9H2X6 1198 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-202ENST00000374876 PSG11Q9UQ72 335 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 RAI1Q7Z5J4 1906 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-202ENST00000374876 IGHV3-13P01766 116 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 KLF3P57682 345 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-202ENST00000374876 HTD2P86397 168 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 LRRC75BQ2VPJ9 315 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 ZNF66Q6ZN08 573 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 FAM90A1Q86YD7 464 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 HSD17B10Q99714 261 aaKnown RBP12.86□□□□□ -0.35
CCDC40-202ENST00000374876 PSMG3Q9BT73 122 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-202ENST00000374876 DCTN5Q9BTE1 182 aa12.86□□□□□ -0.35
CCDC40-202ENST00000374876 PUS1Q9Y606 427 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCDC40-202ENST00000374876 IGKV1D-17A0A075B6S4 117 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 LRRC30A6NM36 301 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 C15orf65H3BRN8 121 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 ST8SIA5O15466 376 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 ZNF737O75373 536 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 P0C879 139 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 GLRXP35754 106 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 CEBPGP53567 150 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 SLC38A11Q08AI6 406 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 LTC4SQ16873 150 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 Q3ZCU0 254 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 PPP1R35Q8TAP8 253 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 OR2V2Q96R30 315 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 TUBA4BQ9H853 241 aa12.85□□□□□ -0.35
CCDC40-202ENST00000374876 TRAV1-1A0A0B4J248 108 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 ODAMA1E959 279 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 OR8U8P0C7N1 319 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 DAOP14920 347 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 GZMHP20718 246 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 APOBEC3AP31941 199 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-202ENST00000374876 CFHR2P36980 270 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 BRWD1-AS2P59051 145 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 NKX6-1P78426 367 aaPredicted RBP12.84□□□□□ -0.35
CCDC40-202ENST00000374876 ICAM4Q14773 271 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 ZNF506Q5JVG8 444 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 OR8G2PQ6IF36 304 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 H2BFWTQ7Z2G1 175 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 CLDND2Q8NHS1 167 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 EDARADDQ8WWZ3 215 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 RPRMQ9NS64 109 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 IGHV3OR15-7A0A075B7D8 119 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 MGST3O14880 152 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 PPIHO43447 177 aaKnown RBP12.84□□□□□ -0.35
CCDC40-202ENST00000374876 RBMXL2O75526 392 aaKnown RBP12.84□□□□□ -0.35
CCDC40-202ENST00000374876 SCAF4O95104 1147 aaKnown RBP12.84□□□□□ -0.35
CCDC40-202ENST00000374876 HSPB1P04792 205 aaKnown RBP12.84□□□□□ -0.35
CCDC40-202ENST00000374876 SRP19P09132 144 aaKnown RBP12.84□□□□□ -0.35
CCDC40-202ENST00000374876 SERF2P84101 59 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 TMEM14EPQ6UXP3 125 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 MOGAT3Q86VF5 341 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 MUC15Q8N387 334 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 GCSAMQ8N6F7 178 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 NUP37Q8NFH4 326 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 HIST1H2BAQ96A08 127 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 MEGF10Q96KG7 1140 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 SNX22Q96L94 193 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 OR4C12Q96R67 309 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 CCL19Q99731 98 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 WDR61Q9GZS3 305 aaKnown RBP12.84□□□□□ -0.35
CCDC40-202ENST00000374876 GNG12Q9UBI6 72 aa12.84□□□□□ -0.35
CCDC40-202ENST00000374876 ANKRD17O75179 2603 aaKnown RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms