RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 BCL2L2Q92843 193 aaPredicted RBP13.7□□□□□ -0.22
SDC4-201ENST00000372733 TRAPPC1Q9Y5R8 145 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 C15orf62A8K5M9 175 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 NUPR1O60356 82 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 CLDN14O95500 239 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 SCGB1D1O95968 90 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 CD82P27701 267 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 EDDM3BP56851 147 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 NUTF2P61970 127 aaKnown RBP13.7□□□□□ -0.22
SDC4-201ENST00000372733 LCN2P80188 198 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 TCF23Q7RTU1 214 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 TMEM144Q7Z5S9 345 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 ZBTB34Q8NCN2 500 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 MRGPRDQ8TDS7 321 aa13.7□□□□□ -0.22
SDC4-201ENST00000372733 IGHV3-43A0A0B4J1X8 118 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 LINC00473A8K010 186 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 C17orf112F2Z3M2 114 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 SMPD2O60906 423 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 IGHV3-43DP0DP04 118 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 ZNF826PQ6ZT77 177 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 CIB3Q96Q77 187 aaPredicted RBP13.69□□□□□ -0.22
SDC4-201ENST00000372733 NEU1Q99519 415 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 TMEM204Q9BSN7 226 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 SNHG12Q9BXW3 62 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 FKBP11Q9NYL4 201 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 RAB29O14966 203 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 RBFOX2O43251 390 aaKnown RBP eCLIP13.69□□□□□ -0.22
SDC4-201ENST00000372733 GCH1P30793 250 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 TBC1D28Q2M2D7 210 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 TPRX1Q8N7U7 411 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 QTRT1Q9BXR0 403 aaKnown RBP13.69□□□□□ -0.22
SDC4-201ENST00000372733 PATZ1Q9HBE1 687 aaKnown RBP13.69□□□□□ -0.22
SDC4-201ENST00000372733 POLR3KQ9Y2Y1 108 aaPredicted RBP13.69□□□□□ -0.22
SDC4-201ENST00000372733 CACNA1DQ01668 2161 aa13.69□□□□□ -0.22
SDC4-201ENST00000372733 HNF1AP20823 631 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 SSTR5P35346 364 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 NANOS1Q8WY41 292 aaKnown RBP13.68□□□□□ -0.22
SDC4-201ENST00000372733 NINJ1Q92982 152 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 COQ2Q96H96 371 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 TRBV20OR9-2A0A075B6H5 130 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 DEFB108AA8MXU0 73 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 PDE6DO43924 150 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 GABRA2P47869 451 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 Q6ZR03 302 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 SDSLQ96GA7 329 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 WDR83OSQ9Y284 106 aa13.68□□□□□ -0.22
SDC4-201ENST00000372733 TMPRSS2O15393 492 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 ZNF766Q5HY98 468 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 SGMS2Q8NHU3 365 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 SLC25A40Q8TBP6 338 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 DIRC2Q96SL1 478 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 PXMP4Q9Y6I8 212 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 URB1O60287 2271 aaKnown RBP13.67□□□□□ -0.22
SDC4-201ENST00000372733 MARCH11A6NNE9 402 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 RAB4BP61018 213 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 RFESDQ8TAC1 157 aa13.67□□□□□ -0.22
SDC4-201ENST00000372733 RYDENQ9NUL5 291 aaKnown RBP13.67□□□□□ -0.22
SDC4-201ENST00000372733 OOEPA6NGQ2 149 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 CD99P14209 185 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 CD1BP29016 333 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 FBXW9Q5XUX1 488 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 SFRP2Q96HF1 295 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 TAAR6Q96RI8 345 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 KCNIP2Q9NS61 270 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 ELOVL5Q9NYP7 299 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 NAGKQ9UJ70 344 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 PSG11Q9UQ72 335 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 GRIFINA4D1Z8 144 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 OR9G9P0C7N8 305 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 CD33P20138 364 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 ADMP35318 185 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 LRP11Q86VZ4 500 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 METRNQ9UJH8 293 aa13.66□□□□□ -0.22
SDC4-201ENST00000372733 A0A1W2PPV4 95 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 F6UZH7 168 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 CER1O95813 267 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 ARL14EPLP0DKL9 152 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 MPV17P39210 176 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 PSG7Q13046 419 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 LTC4SQ16873 150 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 MS4A10Q96PG2 267 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 KIR2DL5BA0A0G2JN68 375 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 KIR2DL5BA0A0G2JPC4 375 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 MDFIC2A0A1B0GVS7 189 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 SCO2A0A1W2PP80 73 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 COL8A2P25067 703 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 G0S2P27469 103 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 SLC35E4Q6ICL7 350 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 FIP1L1Q6UN15 594 aaKnown RBP13.65□□□□□ -0.22
SDC4-201ENST00000372733 KIR2DL5AQ8N109 375 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 OR13A1Q8NGR1 328 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 R3HDM4Q96D70 268 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 PLPPR2Q96GM1 343 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 OBP2BQ9NPH6 170 aa13.65□□□□□ -0.22
SDC4-201ENST00000372733 MEOX1P50221 254 aa13.64□□□□□ -0.23
SDC4-201ENST00000372733 ERVFC1-1P60608 527 aa13.64□□□□□ -0.23
SDC4-201ENST00000372733 C1orf194Q5T5A4 169 aa13.64□□□□□ -0.23
SDC4-201ENST00000372733 DCTN5Q9BTE1 182 aa13.64□□□□□ -0.23
SDC4-201ENST00000372733 HES4Q9HCC6 221 aa13.64□□□□□ -0.23
SDC4-201ENST00000372733 THBS3P49746 956 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms