RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TCF23Q7RTU1 214 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 ZCCHC24Q8N2G6 241 aaKnown RBP10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 CT45A3Q8NHU0 189 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 SFT2D1Q8WV19 159 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 LEAP2Q969E1 77 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 OR4C12Q96R67 309 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 WDR61Q9GZS3 305 aaKnown RBP10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 SLC35B3Q9H1N7 401 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 HIPK2Q9H2X6 1198 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 LINC00574Q9H8X3 128 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 DCAF16Q9NXF7 216 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 KIAA1456Q9P272 454 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 ATMQ13315 3056 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 UBE2L5PA0A1B0GUS4 154 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 hADV38S2A0JD32 116 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 RBFOX3A6NFN3 312 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 ATXN7O15265 892 aaPredicted RBP10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 LY86O95711 162 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 NQO2P16083 231 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 NCMAPQ5T1S8 102 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 PRAMEF5Q5TYX0 476 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 OR4A16Q8NH70 328 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 OR4S2Q8NH73 311 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 PINX1Q96BK5 328 aaKnown RBP10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 RBMXL1Q96E39 390 aaKnown RBP10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 QTRT1Q9BXR0 403 aaKnown RBP10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 LAMA5O15230 3695 aa10.68□□□□□ -0.7
SPTLC1-201ENST00000262554 DMXL2Q8TDJ6 3036 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 PPIAL4EA0A075B759 164 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 SAA2-SAA4A0A096LPE2 208 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 SHISA9B4DS77 424 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 PPIAL4DF5H284 164 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 SCAF4O95104 1147 aaKnown RBP10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 OR9G9P0C7N8 305 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 SAA2P0DJI9 122 aaPredicted RBP10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 PPIAL4FP0DN26 164 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 THBS3P49746 956 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 CCL20P78556 96 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 CBLN2Q8IUK8 224 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 OR10P1Q8NGE3 313 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 DDB2Q92466 427 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 TAF15Q92804 592 aaKnown RBP eCLIP10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 ADTRPQ96IZ2 230 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 CLCC1Q96S66 551 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 TMEM147Q9BVK8 224 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 DYNLRB1Q9NP97 96 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 SLC25A10Q9UBX3 287 aaPredicted RBP10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 PPIAL4AQ9Y536 164 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 LINC00312Q9Y6C7 94 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 PTPRQQ9UMZ3 2332 aa10.67□□□□□ -0.7
SPTLC1-201ENST00000262554 MAP1BP46821 2468 aaKnown RBP10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 TRAV1-1A0A0B4J248 108 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 A0A1W2PPE3 182 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 TMEM178BH3BS89 294 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 IFNA17P01571 189 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 OR2B8PP59922 312 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 MRPS11P82912 194 aaKnown RBP10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 MEF2CQ06413 473 aaPredicted RBP10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 KLRB1Q12918 225 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 AARDQ4LEZ3 155 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 UTF1Q5T230 341 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 SP5Q6BEB4 398 aaPredicted RBP10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 SSX9Q7RTT3 188 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 LYG1Q8N1E2 194 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 ZNF439Q8NDP4 499 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 RNASE6Q93091 150 aaKnown RBP10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 RARRES2Q99969 163 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 GAL3ST2Q9H3Q3 398 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 MS4A5Q9H3V2 200 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 TIMM9Q9Y5J7 89 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 PIEZO2Q9H5I5 2752 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 PCNX1Q96RV3 2341 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 E7EQL1 145 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 CD3EP07766 207 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 CA7P43166 264 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 GNG10P50151 68 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 SPCS3P61009 180 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 SPINK9Q5DT21 86 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 DMRTC2Q8IXT2 367 aaPredicted RBP10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 KDF1Q8NAX2 398 aaPredicted RBP10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 OR10A7Q8NGE5 316 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 CCL17Q92583 94 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 RPRMQ9NS64 109 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 TMEM106BQ9NUM4 274 aa10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 RPUSD1Q9UJJ7 312 aaKnown RBP10.66□□□□□ -0.7
SPTLC1-201ENST00000262554 DOCK11Q5JSL3 2073 aa10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 YLPM1P49750 1951 aaKnown RBP10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 PMS2P5A8MQ11 134 aa10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 OR13C7P0DN81 318 aa10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 RPP30P78346 268 aaKnown RBP10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 HAGHQ16775 308 aa10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 TMEM41BQ5BJD5 291 aa10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 C1orf229Q6ZS94 237 aaPredicted RBP10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 OR52E5Q8NH55 327 aa10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 UNKLQ9H9P5 680 aaKnown RBP10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 NDRG3Q9UGV2 375 aa10.65□□□□□ -0.7
SPTLC1-201ENST00000262554 DCHS1Q96JQ0 3298 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 APOBEC3AP31941 199 aaPredicted RBP10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 GNB2P62879 340 aa10.64□□□□□ -0.71
SPTLC1-201ENST00000262554 RPL31P62899 125 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms