RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PI4KAP42356 2102 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 C7orf71A4D174 169 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 MLNRO43193 412 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 IFNA5P01569 189 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 NKX2-1P43699 371 aaPredicted RBP8.7□□□□□ -1.02
VPS39-214ENST00000614932 NPBWR2P48146 333 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 THBS3P49746 956 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 TMEM50BP56557 158 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 RHOBP62745 196 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 ARF1P84077 181 aaKnown RBP8.7□□□□□ -1.02
VPS39-214ENST00000614932 HAPLN4Q86UW8 402 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 OR10G3Q8NGC4 313 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 NINJ1Q92982 152 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 C8orf44Q96CB5 159 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 NPFFR1Q9GZQ6 430 aa8.7□□□□□ -1.02
VPS39-214ENST00000614932 A0A1B0GW15 77 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 ZNF716A6NP11 495 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 K7EP34 96 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 ZNF324O75467 553 aaPredicted RBP8.69□□□□□ -1.02
VPS39-214ENST00000614932 RHBDL1O75783 438 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 CGAP01215 116 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 RPL18Q07020 188 aaKnown RBP8.69□□□□□ -1.02
VPS39-214ENST00000614932 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.69□□□□□ -1.02
VPS39-214ENST00000614932 LCN12Q6JVE5 192 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 OR4A5Q8NH83 315 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 RTN4IP1Q8WWV3 396 aaPredicted RBP8.69□□□□□ -1.02
VPS39-214ENST00000614932 AP1S3Q96PC3 154 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 LINC00470Q9BZP3 86 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 VSIRQ9H7M9 311 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 LOC107986453A0A1B0GWG9 222 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 SSSCA1O60232 199 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 LMX1BO60663 402 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 MPIG6BO95866 241 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 HLA-DQA2P01906 255 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 IGKV3-11P04433 115 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 IL11P20809 199 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 ODF3L1Q8IXM7 274 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 SPEM1Q8N4L4 309 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 ARHGAP5-AS1Q96IT6 56 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 CLEC7AQ9BXN2 247 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 ZNF286AQ9HBT8 521 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 MMP25Q9NPA2 562 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 COPS7AQ9UBW8 275 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 SIT1Q9Y3P8 196 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 TSSC4Q9Y5U2 329 aaPredicted RBP8.69□□□□□ -1.02
VPS39-214ENST00000614932 TNFRSF18Q9Y5U5 241 aa8.69□□□□□ -1.02
VPS39-214ENST00000614932 PLPP3O14495 311 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 LINC00869P0C866 280 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 ZNF17P17021 662 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 MDH2P40926 338 aaKnown RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 FUT6P51993 359 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 FBXW4P57775 412 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 RPS4XP62701 263 aaKnown RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 ABCA11PQ4W5N1 156 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 OR10J3Q5JRS4 329 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 FNDC7Q5VTL7 733 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 OR4F5Q8NH21 305 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 ZNF501Q96CX3 271 aaPredicted RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 ST20Q9HBF5 79 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 DECR2Q9NUI1 292 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 IGKV3D-11A0A0A0MRZ8 115 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 LOC102725191A0A1B0GVB3 256 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 A0A1W2PR80 420 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 C1QTNF9BB2RNN3 333 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 ZNF878C9JN71 531 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 K7ESF4 209 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 FCN1O00602 326 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 LAMTOR5O43504 91 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 ZNF207O43670 478 aaKnown RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 GATA2P23769 480 aaPredicted RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 GPM6AP51674 278 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 RPL24P83731 157 aaKnown RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 TESK1Q15569 626 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 LPAL2Q16609 132 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 BLNKQ8WV28 456 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 LHX4Q969G2 390 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 MSI2Q96DH6 328 aaKnown RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 CDX2Q99626 313 aaPredicted RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 WDR61Q9GZS3 305 aaKnown RBP8.68□□□□□ -1.02
VPS39-214ENST00000614932 TAAR3PQ9P1P4 343 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 JPT1Q9UK76 154 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 PSG8Q9UQ74 426 aa8.68□□□□□ -1.02
VPS39-214ENST00000614932 CEP192Q8TEP8 1941 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 A0A1B0GX78 115 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 FRG2CA6NGY1 282 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 PATE3B3GLJ2 98 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 CFIP05156 583 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 FTH1P19P0C7X4 201 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 CLDN17P56750 224 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 ROM1Q03395 351 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 MRPL54Q6P161 138 aaKnown RBP8.67□□□□□ -1.02
VPS39-214ENST00000614932 INO80CQ6PI98 192 aaPredicted RBP8.67□□□□□ -1.02
VPS39-214ENST00000614932 ASCL4Q6XD76 172 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 TRAV9-1A0A075B6T8 112 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 KIAA1324LA8MWY0 1029 aaPredicted RBP8.67□□□□□ -1.02
VPS39-214ENST00000614932 SRD5A2P31213 254 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 CCL7P80098 99 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 PSG4Q00888 419 aa8.67□□□□□ -1.02
VPS39-214ENST00000614932 PMP22Q01453 160 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms