RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 HIST1H2BAQ96A08 127 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 MEGF10Q96KG7 1140 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 YPEL2Q96QA6 119 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 SAV1Q9H4B6 383 aaPredicted RBP12.4□□□□□ -0.42
NUP54-217ENST00000514987 METRNQ9UJH8 293 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 FAM215AQ9Y5M1 114 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 FREM2Q5SZK8 3169 aa12.4□□□□□ -0.42
NUP54-217ENST00000514987 IGLV3-9A0A075B6K5 115 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 IGKV1D-17A0A075B6S4 117 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 A0A087WWC5 75 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 LOC102723971A0A1B0GUV8 181 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 C17orf98A8MV24 154 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 ITGB1BP1O14713 200 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 S1PR2O95136 353 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 IFNA1P01562 189 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 MBP02144 154 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 PTAFRP25105 342 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 CEACAM8P31997 349 aaPredicted RBP12.39□□□□□ -0.43
NUP54-217ENST00000514987 ZNF816Q0VGE8 651 aaPredicted RBP12.39□□□□□ -0.43
NUP54-217ENST00000514987 HAGHQ16775 308 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 ZNF561Q8N587 486 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 TAF15Q92804 592 aaKnown RBP eCLIP12.39□□□□□ -0.43
NUP54-217ENST00000514987 C5orf30Q96GV9 206 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 OR4C12Q96R67 309 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 TMEM147Q9BVK8 224 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 RPRMQ9NS64 109 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 OR6C3Q9NZP0 311 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 PSG11Q9UQ72 335 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 ZNF318Q5VUA4 2279 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 F2RL2O00254 374 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 RBFOX2O43251 390 aaKnown RBP eCLIP12.39□□□□□ -0.43
NUP54-217ENST00000514987 CACNA1HO95180 2353 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 IFNA4P05014 189 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 MAS1LP35410 378 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 KIR2DS2P43631 304 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 GATA4P43694 442 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 GPR12P47775 334 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 Q3ZCU0 254 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 FAM57AQ8TBR7 257 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 AGMATQ9BSE5 352 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 RSG1Q9BU20 258 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 CISD1Q9NZ45 108 aaKnown RBP12.39□□□□□ -0.43
NUP54-217ENST00000514987 GAB2Q9UQC2 676 aa12.39□□□□□ -0.43
NUP54-217ENST00000514987 PUS1Q9Y606 427 aaKnown RBP eCLIP12.39□□□□□ -0.43
NUP54-217ENST00000514987 WDFY4Q6ZS81 3184 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 KIAA2026Q5HYC2 2103 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 B4DEV8 164 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 H3BQ15 152 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 TM4SF5O14894 197 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 LHBP01229 141 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 EGR1P18146 543 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 TAGLN2P37802 199 aaKnown RBP12.38□□□□□ -0.43
NUP54-217ENST00000514987 TCF15Q12870 199 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 EDDM3AQ14507 147 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 AARDQ4LEZ3 155 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 MORN2Q502X0 79 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 ZNF787Q6DD87 383 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 ETV3LQ6ZN32 361 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 SLC35E3Q7Z769 313 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 ZNF429Q86V71 674 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 GCSAMQ8N6F7 178 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 OR10P1Q8NGE3 313 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 DTD1Q8TEA8 209 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 MALSU1Q96EH3 234 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 TVP23CQ96ET8 276 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 OR2V2Q96R30 315 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 P2RX4Q99571 388 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 NIPSNAP3BQ9BS92 247 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 GNG12Q9UBI6 72 aa12.38□□□□□ -0.43
NUP54-217ENST00000514987 INTS1Q8N201 2190 aaKnown RBP12.38□□□□□ -0.43
NUP54-217ENST00000514987 MUC3AQ02505 3323 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 CHD3Q12873 2000 aaKnown RBP12.37□□□□□ -0.43
NUP54-217ENST00000514987 ST8SIA5O15466 376 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 SOX15O60248 233 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 NDUFS6O75380 124 aaKnown RBP12.37□□□□□ -0.43
NUP54-217ENST00000514987 HPRT1P00492 218 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 TNFSF4P23510 183 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 AKR1C3P42330 323 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 RAB7AP51149 207 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 BRWD1-AS2P59051 145 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 RPP30P78346 268 aaKnown RBP12.37□□□□□ -0.43
NUP54-217ENST00000514987 TMEM30BQ3MIR4 351 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 OR2B11Q5JQS5 317 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 BTNL3Q6UXE8 466 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 MRGPRGQ86SM5 289 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 LRP11Q86VZ4 500 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 RBMXL3Q8N7X1 1067 aaKnown RBP12.37□□□□□ -0.43
NUP54-217ENST00000514987 RFESDQ8TAC1 157 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 FAM222BQ8WU58 562 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 C20orf24Q9BUV8 137 aa12.37□□□□□ -0.43
NUP54-217ENST00000514987 OR2C1O95371 312 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 TFF1P04155 84 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 BCL2P10415 239 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 RAB5AP20339 215 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 DUTP33316 252 aaKnown RBP12.36□□□□□ -0.43
NUP54-217ENST00000514987 GNB2P62879 340 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 MSMPQ1L6U9 139 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 OR8G2PQ6IF36 304 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 FAM180AQ6UWF9 173 aa12.36□□□□□ -0.43
NUP54-217ENST00000514987 RBMS3Q6XE24 437 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms