RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TLE4Q04727 773 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 EXT1Q16394 746 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 SLC25A53Q5H9E4 307 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 HAPLN4Q86UW8 402 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 APH1AQ96BI3 265 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 PARD6AQ9NPB6 346 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 METRNQ9UJH8 293 aa7.34□□□□□ -1.24
USP40-203ENST00000427112 ACTL6BO94805 426 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 SYNGR4O95473 234 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 IGKV1-5P01602 117 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 DTYMKP23919 212 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 PKIAP61925 76 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 KCNMB1Q16558 191 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 MDP1Q86V88 176 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 KMT5CQ86Y97 462 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 EXPH5Q8NEV8 1989 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 DNASE2BQ8WZ79 361 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 IMMP2LQ96T52 175 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 ATP5SQ99766 215 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 SPIN2AQ99865 258 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 SPIN2BQ9BPZ2 258 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 FOXJ2Q9P0K8 574 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 STRAPQ9Y3F4 350 aaKnown RBP7.33□□□□□ -1.24
USP40-203ENST00000427112 LOXL2Q9Y4K0 774 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 IGHV2-70P01814 119 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 IL2RGP31785 369 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 PMELP40967 661 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 COL10A1Q03692 680 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 DHRS13Q6UX07 377 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 REC114Q7Z4M0 266 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 OR5D13Q8NGL4 314 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 DMRT1Q9Y5R6 373 aa7.33□□□□□ -1.24
USP40-203ENST00000427112 XKRY2A2RUG3 117 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 FBLL1A6NHQ2 334 aaKnown RBP7.32□□□□□ -1.24
USP40-203ENST00000427112 NPIPB13A6NJU9 1138 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 NPIPB4C9JG80 1138 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 RPL30P62888 115 aaKnown RBP7.32□□□□□ -1.24
USP40-203ENST00000427112 SLC38A11Q08AI6 406 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 MRPL30Q8TCC3 161 aaKnown RBP7.32□□□□□ -1.24
USP40-203ENST00000427112 DUSP23Q9BVJ7 150 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 PSG11Q9UQ72 335 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 TLN1Q9Y490 2541 aaKnown RBP7.32□□□□□ -1.24
USP40-203ENST00000427112 KIAA1549Q9HCM3 1950 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 TECTAO75443 2155 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 PITX3O75364 302 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 S1PR2O95136 353 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 CDS2O95674 445 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 OR2H2O95918 312 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 GZMHP20718 246 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 HOXA5P20719 270 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 CDC34P49427 236 aaPredicted RBP7.32□□□□□ -1.24
USP40-203ENST00000427112 OR1C1Q15619 314 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 UTF1Q5T230 341 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 FAM78BQ5VT40 261 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 C1orf87Q8N0U7 546 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 DKK1O94907 266 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 IGLV3-1P01715 115 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 APELAP0DMC3 54 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 CDX1P47902 265 aaPredicted RBP7.32□□□□□ -1.24
USP40-203ENST00000427112 TAS2R30P59541 319 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 KRTDAPP60985 99 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 FFAR4Q5NUL3 377 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 ACSM6Q6P461 480 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 ZNF295-AS1Q8N0V1 137 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 FGFRL1Q8N441 504 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 RPP25LQ8N5L8 163 aaKnown RBP7.32□□□□□ -1.24
USP40-203ENST00000427112 ZNF439Q8NDP4 499 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 RNF122Q9H9V4 155 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 KIAA1456Q9P272 454 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 OR2W1Q9Y3N9 320 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 SPG11Q96JI7 2443 aa7.32□□□□□ -1.24
USP40-203ENST00000427112 C17orf98A8MV24 154 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 FRMD6-AS1P0C7T7 363 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 NTF3P20783 257 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 SRD5A2P31213 254 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 GNB2P62879 340 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 HMGN3Q15651 99 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 NMSQ5H8A3 153 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 TMEM211Q6ICI0 200 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 ARRDC1-AS1Q9H2J1 176 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 ZNRD1Q9P1U0 126 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 AKAP13Q12802 2813 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 CUBNO60494 3623 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 GJE1A6NN92 205 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 H7BYZ3 331 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 PSPNO60542 156 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 BCL2P10415 239 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 MPLP40238 635 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 MDH2P40926 338 aaKnown RBP7.31□□□□□ -1.24
USP40-203ENST00000427112 ATP5G3P48201 142 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 TCL1AP56279 114 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 FAM90A2PQ658T7 463 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 PCSK4Q6UW60 755 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 DRAM1Q8N682 238 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 OR13D1Q8NGV5 346 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 OR4X1Q8NH49 305 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 MALSU1Q96EH3 234 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 SEBOXQ9HB31 216 aaPredicted RBP7.31□□□□□ -1.24
USP40-203ENST00000427112 GLIPR1P48060 266 aa7.31□□□□□ -1.24
USP40-203ENST00000427112 HNRNPA3P51991 378 aaKnown RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms