RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PRR14LQ5THK1 2151 aa18.4■□□□□ 0.54
SHMT1-202ENST00000352886 SPENQ96T58 3664 aaKnown RBP18.4■□□□□ 0.54
SHMT1-202ENST00000352886 CACNA1HO95180 2353 aa18.4■□□□□ 0.54
SHMT1-202ENST00000352886 MEX3AA1L020 520 aaKnown RBP18.4■□□□□ 0.54
SHMT1-202ENST00000352886 WNT2P09544 360 aa18.4■□□□□ 0.54
SHMT1-202ENST00000352886 ZNF16P17020 682 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-202ENST00000352886 RUNX1Q01196 453 aa18.4■□□□□ 0.54
SHMT1-202ENST00000352886 VWA1Q6PCB0 445 aa18.4■□□□□ 0.54
SHMT1-202ENST00000352886 RPS10P5Q9NQ39 176 aa18.4■□□□□ 0.54
SHMT1-202ENST00000352886 SMCO4Q9NRQ5 59 aa18.4■□□□□ 0.54
SHMT1-202ENST00000352886 CFAP47Q6ZTR5 3102 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 SPAARA0A1B0GVQ0 90 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 KIAA1324LA8MWY0 1029 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-202ENST00000352886 CRYBA1P05813 215 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 FTH1P19P0C7X4 201 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 CXorf67Q86X51 503 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-202ENST00000352886 WIPI2Q9Y4P8 454 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 ZFHX4Q86UP3 3567 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 TMEM210A6NLX4 147 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 WDR1O75083 606 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 HAND1O96004 215 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 WT1P19544 449 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-202ENST00000352886 HOXC12P31275 282 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 CEACAM6P40199 344 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 KIR2DL2P43627 348 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-202ENST00000352886 S100A12P80511 92 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 AWAT1Q58HT5 328 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 ZNF295-AS1Q8N0V1 137 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 ATP5SQ99766 215 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 CACNG5Q9UF02 275 aa18.39■□□□□ 0.53
SHMT1-202ENST00000352886 COLCA2A8K830 154 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 STX12Q86Y82 276 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 C9orf106Q8NAJ2 232 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 GNPNAT1Q96EK6 184 aaPredicted RBP18.38■□□□□ 0.53
SHMT1-202ENST00000352886 MLNRO43193 412 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 PSPNO60542 156 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 CBR1P16152 277 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 RPL23AP62750 156 aaKnown RBP18.38■□□□□ 0.53
SHMT1-202ENST00000352886 CCL20P78556 96 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 AVPI1Q5T686 147 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 ZNF826PQ6ZT77 177 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 CLCC1Q96S66 551 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 RARRES2Q99969 163 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 SLC35B3Q9H1N7 401 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 KCNJ16Q9NPI9 418 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 ASCL3Q9NQ33 180 aa18.38■□□□□ 0.53
SHMT1-202ENST00000352886 CNOT4O95628 575 aaKnown RBP18.37■□□□□ 0.53
SHMT1-202ENST00000352886 IGKV3-15P01624 115 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 SNRNP70P08621 437 aaKnown RBP18.37■□□□□ 0.53
SHMT1-202ENST00000352886 HOXA4Q00056 320 aaPredicted RBP18.37■□□□□ 0.53
SHMT1-202ENST00000352886 TMEM267Q0VDI3 215 aaPredicted RBP18.37■□□□□ 0.53
SHMT1-202ENST00000352886 FIP1L1Q6UN15 594 aaKnown RBP18.37■□□□□ 0.53
SHMT1-202ENST00000352886 LSM10Q969L4 123 aaKnown RBP18.37■□□□□ 0.53
SHMT1-202ENST00000352886 RAB40CQ96S21 281 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 C20orf24Q9BUV8 137 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 LIN7CQ9NUP9 197 aaKnown RBP18.37■□□□□ 0.53
SHMT1-202ENST00000352886 M0R036 132 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 WNT9BO14905 357 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 TXNL1O43396 289 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 IGKV1-5P01602 117 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 RAB13P51153 203 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 ZNF585BQ52M93 769 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 SPSB3Q6PJ21 355 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 WDR31Q8NA23 367 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 C14orf79Q96F83 325 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 HES4Q9HCC6 221 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 COA4Q9NYJ1 87 aa18.37■□□□□ 0.53
SHMT1-202ENST00000352886 DIDO1Q9BTC0 2240 aaKnown RBP18.36■□□□□ 0.53
SHMT1-202ENST00000352886 C7orf77A4D0Y5 90 aa18.36■□□□□ 0.53
SHMT1-202ENST00000352886 AQP7O14520 342 aa18.36■□□□□ 0.53
SHMT1-202ENST00000352886 OR13C7P0DN81 318 aa18.36■□□□□ 0.53
SHMT1-202ENST00000352886 COX5AP20674 150 aa18.36■□□□□ 0.53
SHMT1-202ENST00000352886 SULT1A1P50225 295 aa18.36■□□□□ 0.53
SHMT1-202ENST00000352886 IGFL2Q6UWQ7 119 aa18.36■□□□□ 0.53
SHMT1-202ENST00000352886 DRAM1Q8N682 238 aa18.36■□□□□ 0.53
SHMT1-202ENST00000352886 OR8G5Q8NG78 346 aa18.36■□□□□ 0.53
SHMT1-202ENST00000352886 TRAV17A0A0B4J275 112 aa18.35■□□□□ 0.53
SHMT1-202ENST00000352886 A0A1B0GW64 132 aa18.35■□□□□ 0.53
SHMT1-202ENST00000352886 CD300LFQ8TDQ1 290 aa18.35■□□□□ 0.53
SHMT1-202ENST00000352886 WSB1Q9Y6I7 421 aa18.35■□□□□ 0.53
SHMT1-202ENST00000352886 CACNA1GO43497 2377 aa18.35■□□□□ 0.53
SHMT1-202ENST00000352886 C15orf54Q8N8G6 183 aa18.35■□□□□ 0.53
SHMT1-202ENST00000352886 BCL2L14Q9BZR8 327 aa18.35■□□□□ 0.53
SHMT1-202ENST00000352886 ESRP2Q9H6T0 727 aaKnown RBP18.35■□□□□ 0.53
SHMT1-202ENST00000352886 PARD6AQ9NPB6 346 aa18.35■□□□□ 0.53
SHMT1-202ENST00000352886 INTS1Q8N201 2190 aaKnown RBP18.34■□□□□ 0.53
SHMT1-202ENST00000352886 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.34■□□□□ 0.53
SHMT1-202ENST00000352886 SYNGR2O43760 224 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 DFFBO76075 338 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 CEACAM1P13688 526 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 FOXF2Q12947 444 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 AKR1C8PQ5T2L2 129 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 C11orf53Q8IXP5 236 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 SNIP1Q8TAD8 396 aaKnown RBP18.34■□□□□ 0.53
SHMT1-202ENST00000352886 KCNIP1Q9NZI2 227 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 FZR1Q9UM11 496 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 TMEM30CPA0ZSE6 113 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 A6NLC8 198 aa18.34■□□□□ 0.53
SHMT1-202ENST00000352886 ACAA1P09110 424 aaPredicted RBP18.34■□□□□ 0.53
SHMT1-202ENST00000352886 IAPPP10997 89 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms