RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	FAM53A	Q6NSI3	398 aa	Predicted RBP	13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	ACSM6	Q6P461	480 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	LINC00596	Q86U02	117 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	ZDHHC13	Q8IUH4	622 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	PELI1	Q96FA3	418 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	CIB1	Q99828	191 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	FAM192A	Q9GZU8	254 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	RIBC2	Q9H4K1	309 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	RAB9B	Q9NP90	201 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	MRPS28	Q9Y2Q9	187 aa	Known RBP	13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	WSB1	Q9Y6I7	421 aa		13.66	□□□□□ -0.22
NUP50-218	ENST00000493456	ALMS1	Q8TCU4	4167 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	IGHV3-43	A0A0B4J1X8	118 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	TRAV41	A0A0B4J266	112 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456		J3QRE1	110 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	ATP6V0E1	O15342	81 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	OR7C1	O76099	320 aa	Predicted RBP	13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	IGHV3-43D	P0DP04	118 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	SLURP1	P55000	103 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	LSAMP	Q13449	338 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	ATP6AP1	Q15904	470 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	OR10K1	Q8NGX5	313 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	MRPL48	Q96GC5	212 aa	Known RBP	13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	C4orf36	Q96KX1	117 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	MYCBP	Q99417	103 aa	Predicted RBP	13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	GABARAPL3	Q9BY60	117 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	PARP11	Q9NR21	331 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	DHDH	Q9UQ10	334 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	POMP	Q9Y244	141 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	ST3GAL6	Q9Y274	331 aa		13.65	□□□□□ -0.22
NUP50-218	ENST00000493456	MAGEA13P	A6NCF6	341 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456		J3QLW9	94 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	SLC31A2	O15432	143 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	ATP8B1	O43520	1251 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	HTR3B	O95264	441 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	ZNF19	P17023	458 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	RAB3A	P20336	220 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	VHL	P40337	213 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	RBM11	P57052	281 aa	Known RBP	13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	DNAL1	Q4LDG9	190 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	ASCL4	Q6XD76	172 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	SATL1	Q86VE3	508 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	MINDY2	Q8NBR6	621 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	ZNF439	Q8NDP4	499 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	UBALD1	Q8TB05	177 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	ARPC1A	Q92747	370 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	SPATA25	Q9BR10	227 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	TOLLIP	Q9H0E2	274 aa		13.64	□□□□□ -0.23
NUP50-218	ENST00000493456	IGHV7-81	A0A0B4J1V7	117 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	TMEM212	A6NML5	194 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	HSPA12A	O43301	675 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	LANCL1	O43813	399 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	LGALS1	P09382	135 aa	Known RBP	13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	POLR2I	P36954	125 aa	Known RBP	13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	PITPNA	Q00169	270 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	MPV17L	Q2QL34	196 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	STEAP3	Q658P3	488 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	ZNF529	Q6P280	563 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	SGPP2	Q8IWX5	399 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	ACBD7	Q8N6N7	88 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	CCDC107	Q8WV48	283 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	TSEN15	Q8WW01	171 aa	Known RBP	13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	TRUB1	Q8WWH5	349 aa	Known RBP	13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	OR4C12	Q96R67	309 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	ALX4	Q9H161	411 aa	Predicted RBP	13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	C19orf73	Q9NVV2	129 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	IL36G	Q9NZH8	169 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	ZNF581	Q9P0T4	197 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	GNG12	Q9UBI6	72 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	ERGIC3	Q9Y282	383 aa		13.63	□□□□□ -0.23
NUP50-218	ENST00000493456	AIP	O00170	330 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	SPINT2	O43291	252 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	GYS2	P54840	703 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	ACTB	P60709	375 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	ZNF497	Q6ZNH5	498 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	STX19	Q8N4C7	294 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	OR52N1	Q8NH53	320 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	CST11	Q9H112	138 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	METTL9	Q9H1A3	318 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	TPSG1	Q9NRR2	321 aa		13.62	□□□□□ -0.23
NUP50-218	ENST00000493456	IGHV4OR15-8	A0A075B7B6	117 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456		A0A087WW49	117 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	GEMIN2	O14893	280 aa	Known RBP	13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	ARPC1B	O15143	372 aa	Known RBP	13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	NBR2	O15453	112 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	GYG2	O15488	501 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	MT-ND4	P03905	459 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	CSTB	P04080	98 aa	Known RBP	13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	ZNF134	P52741	427 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	MRPL28	Q13084	256 aa	Known RBP	13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	CT45A1	Q5HYN5	189 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	ATAD3C	Q5T2N8	411 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456		Q8N1Y9	231 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	SYS1	Q8N2H4	156 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	TCTEX1D1	Q8N7M0	179 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	CCDC197	Q8NCU1	140 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	OR51A2	Q8NGJ7	313 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	OR5AK2	Q8NH90	309 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	CT45A3	Q8NHU0	189 aa		13.61	□□□□□ -0.23
NUP50-218	ENST00000493456	NEK7	Q8TDX7	302 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms