RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 PROK1P58294 105 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 HTD2P86397 168 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 MADCAM1Q13477 382 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 SSX2Q16385 188 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 C17orf58Q2M2W7 97 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 HLA-DRB5Q30154 266 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 ATAD3CQ5T2N8 411 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 RAB12Q6IQ22 244 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 CD200R1LQ6Q8B3 271 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 FAM89BQ8N5H3 189 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 OR8H1Q8NGG4 311 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 OR4P4Q8NGL7 312 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 NDNFQ8TB73 568 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 PIFOQ8TCI5 191 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 MUL1Q969V5 352 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 GALMQ96C23 342 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 KIRREL1Q96J84 757 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 Q96M66 194 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 TM2D1Q9BX74 207 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 MMP28Q9H239 520 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 MBNL3Q9NUK0 354 aaKnown RBP5.17□□□□□ -1.58
USP54-202ENST00000413442 CALYQ9NYX4 217 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 KIF25Q9UIL4 384 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 TRAPPC2LQ9UL33 140 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 PEX16Q9Y5Y5 336 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 V9GY05 133 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 CUBNO60494 3623 aa5.17□□□□□ -1.58
USP54-202ENST00000413442 TRBV6-6A0A0A6YYG2 114 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 METTL21EPA6NDL7 271 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 FAM90A9PA6NNJ1 464 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 TMEM14DPA8MWL7 114 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 AIPO00170 330 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 FGF16O43320 207 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 YPEL1O60688 119 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 CRTAPO75718 401 aaPredicted RBP5.16□□□□□ -1.58
USP54-202ENST00000413442 SCGNO76038 276 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 DIRAS3O95661 229 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 HSMCR30P0CW71 290 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 MDKP21741 143 aaPredicted RBP5.16□□□□□ -1.58
USP54-202ENST00000413442 COX7A1P24310 79 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 CD1BP29016 333 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 SLC6A1P30531 599 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 SNU13P55769 128 aaKnown RBP5.16□□□□□ -1.58
USP54-202ENST00000413442 RPS27AP62979 156 aaKnown RBP5.16□□□□□ -1.58
USP54-202ENST00000413442 ZNF816Q0VGE8 651 aaPredicted RBP5.16□□□□□ -1.58
USP54-202ENST00000413442 KLRD1Q13241 179 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 EBI3Q14213 229 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 HABP2Q14520 560 aaPredicted RBP5.16□□□□□ -1.58
USP54-202ENST00000413442 SRSF7Q16629 238 aaKnown RBP eCLIP5.16□□□□□ -1.58
USP54-202ENST00000413442 PIGYQ3MUY2 71 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 UBE2UQ5VVX9 321 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 LIPKQ5VXJ0 399 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 ZNF782Q6ZMW2 699 aaPredicted RBP5.16□□□□□ -1.58
USP54-202ENST00000413442 Q6ZSV7 163 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 Q6ZTK2 550 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 MOB1BQ7L9L4 216 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 TCF23Q7RTU1 214 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 LRRTM1Q86UE6 522 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 CROCCP3Q8IVE0 287 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 PDZD9Q8IXQ8 264 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 TPRX1Q8N7U7 411 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 ZFP41Q8N8Y5 198 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 OR56B1Q8NGI3 324 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 NEK7Q8TDX7 302 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 ARL11Q969Q4 196 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 RPEQ96AT9 228 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 CNBD2Q96M20 576 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 RBM14Q96PK6 669 aaKnown RBP5.16□□□□□ -1.58
USP54-202ENST00000413442 DUX5Q96PT3 197 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 YPEL2Q96QA6 119 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 OR5M11Q96RB7 305 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 TMED9Q9BVK6 235 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 TMEM59Q9BXS4 323 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 GON7Q9BXV9 100 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 SELENOIQ9C0D9 397 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 ETAA1Q9NY74 926 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 ABRACLQ9P1F3 81 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 IL36RNQ9UBH0 155 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 RAB22AQ9UL26 194 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 PSG11Q9UQ72 335 aa5.16□□□□□ -1.58
USP54-202ENST00000413442 A0A1W2PPK0 400 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 A0A1W2PRD5 423 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 A0A1W2PRF3 423 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 A0A1W2PRM7 423 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 PEX14O75381 377 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 OR2F2O95006 317 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 VSIG8P0DPA2 414 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 CALCBP10092 127 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 RAB6AP20340 208 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 GADD45AP24522 165 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 MYL9P24844 172 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 NFYBP25208 207 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 SERPINB10P48595 397 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 ZNF137PP52743 207 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 EFNB2P52799 333 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 SRSF2Q01130 221 aaKnown RBP5.15□□□□□ -1.59
USP54-202ENST00000413442 RELBQ01201 579 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 ATXN7L3Q14CW9 347 aaPredicted RBP5.15□□□□□ -1.59
USP54-202ENST00000413442 HERPUD1Q15011 391 aa5.15□□□□□ -1.59
USP54-202ENST00000413442 P2RY14Q15391 338 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms