RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 OR8B3Q8NGG8 313 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 ZFAND2BQ8WV99 257 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 GAFA1Q96PS6 74 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 OR8B2Q96RD0 313 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 OCSTAMPQ9BR26 566 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 GSX2Q9BZM3 304 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 ZNF581Q9P0T4 197 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 SLC25A10Q9UBX3 287 aaPredicted RBP11.86□□□□□ -0.51
SKA1-202ENST00000398452 KLK11Q9UBX7 282 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 ZNF107Q9UII5 783 aaPredicted RBP11.86□□□□□ -0.51
SKA1-202ENST00000398452 ZNF222Q9UK12 451 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 ELF5Q9UKW6 265 aaPredicted RBP11.86□□□□□ -0.51
SKA1-202ENST00000398452 KCNK7Q9Y2U2 307 aa11.86□□□□□ -0.51
SKA1-202ENST00000398452 PRRC2AP48634 2157 aaKnown RBP11.86□□□□□ -0.51
SKA1-202ENST00000398452 TMEM82A0PJX8 343 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 ZNF736B4DX44 427 aaPredicted RBP11.85□□□□□ -0.51
SKA1-202ENST00000398452 PSPNO60542 156 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 IFNA6P05013 189 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 FCER2P06734 321 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 OR3A1P47881 315 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 TAS2R46P59540 309 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 C6orf183Q5T699 404 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 SLC35E4Q6ICL7 350 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 TRAT1Q6PIZ9 186 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 ZNF525Q8N782 197 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 FAM216BQ8N7L0 139 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 ZNF565Q8N9K5 539 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 BEST4Q8NFU0 473 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 OR5H2Q8NGV7 314 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 OR4K15Q8NH41 348 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 IGFBPL1Q8WX77 278 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 DEDD2Q8WXF8 326 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 DYRK2Q92630 601 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 NEIL1Q96FI4 390 aaPredicted RBP11.85□□□□□ -0.51
SKA1-202ENST00000398452 SDHCQ99643 169 aaPredicted RBP11.85□□□□□ -0.51
SKA1-202ENST00000398452 C7orf50Q9BRJ6 194 aaKnown RBP11.85□□□□□ -0.51
SKA1-202ENST00000398452 LIME1Q9H400 295 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 KAAG1Q9UBP8 84 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 MAB21L2Q9Y586 359 aa11.85□□□□□ -0.51
SKA1-202ENST00000398452 NAP1L6A6NFF2 107 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 CEACAM18A8MTB9 384 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 SSX5O60225 188 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 ZNF737O75373 536 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 TFF1P04155 84 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 FCGR3AP08637 254 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 AKAIN1P0CW23 69 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 PAX1P15863 534 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 TBPP20226 339 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 RBMXP38159 391 aaKnown RBP11.84□□□□□ -0.51
SKA1-202ENST00000398452 AESQ08117 197 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 MEF2DQ14814 521 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 RNASE10Q5GAN6 216 aaKnown RBP11.84□□□□□ -0.51
SKA1-202ENST00000398452 ZNF497Q6ZNH5 498 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 C17orf107Q6ZR85 190 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 TMEM17Q86X19 198 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 HOGA1Q86XE5 327 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 POC5Q8NA72 575 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 TMEM229BQ8NBD8 167 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 CCDC107Q8WV48 283 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 H1FXQ92522 213 aaKnown RBP11.84□□□□□ -0.51
SKA1-202ENST00000398452 NINJ1Q92982 152 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 HDHD3Q9BSH5 251 aaPredicted RBP11.84□□□□□ -0.51
SKA1-202ENST00000398452 MCUBQ9NWR8 336 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 OR6C3Q9NZP0 311 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 LPAR3Q9UBY5 353 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 KIF25Q9UIL4 384 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 RBMX2Q9Y388 322 aaKnown RBP11.84□□□□□ -0.51
SKA1-202ENST00000398452 CELSR1Q9NYQ6 3014 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 MTORP42345 2549 aa11.84□□□□□ -0.51
SKA1-202ENST00000398452 TRGV10A0A0A0MS01 117 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 A0A1W2PPH5 198 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 hADV38S2A0JD32 116 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 DISC1C4P0D8 188 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 RAB3DO95716 219 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 MT-ND4P03905 459 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 HLA-DMAP28067 261 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 ERP29P30040 261 aaKnown RBP11.83□□□□□ -0.52
SKA1-202ENST00000398452 GLP1RP43220 463 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 NPY4RP50391 375 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 P2RX3P56373 397 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 DYRK1AQ13627 763 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 SRSF7Q16629 238 aaKnown RBP eCLIP11.83□□□□□ -0.52
SKA1-202ENST00000398452 DEFB113Q30KQ7 82 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 ESCO2Q56NI9 601 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 STEAP3Q658P3 488 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 RTN4RL2Q86UN3 420 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 LYSMD2Q8IV50 215 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 LRRC75A-AS1Q8N1F1 130 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 GVQW1Q8N7I0 195 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 PLPPR1Q8TBJ4 325 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 MRPL30Q8TCC3 161 aaKnown RBP11.83□□□□□ -0.52
SKA1-202ENST00000398452 TRIM63Q969Q1 353 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 RAB39BQ96DA2 213 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 NARFLQ9H6Q4 476 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 Q9N2K0 584 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 CLN8Q9UBY8 286 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 ZNF230Q9UIE0 474 aaPredicted RBP11.83□□□□□ -0.52
SKA1-202ENST00000398452 SETD2Q9BYW2 2564 aaPredicted RBP11.83□□□□□ -0.52
SKA1-202ENST00000398452 TANC2Q9HCD6 1990 aa11.83□□□□□ -0.52
SKA1-202ENST00000398452 TRBV6-6A0A0A6YYG2 114 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms