RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 TMPRSS2O15393 492 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 PPIHO43447 177 aaKnown RBP16.56■□□□□ 0.24
CLN3-205ENST00000359984 CD74P04233 296 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 AKAIN1P0CW23 69 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 TMEM33P57088 247 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 KRTAP10-9P60411 292 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 IL13RA1P78552 427 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 KCNJ8Q15842 424 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 SLC35E4Q6ICL7 350 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 OR4C16Q8NGL9 310 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 C7orf50Q9BRJ6 194 aaKnown RBP16.56■□□□□ 0.24
CLN3-205ENST00000359984 Q9N2K0 584 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 TMEM30CPA0ZSE6 113 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 CENPXA8MT69 81 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 MGST3O14880 152 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 BTCP35070 178 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 GLIPR1P48060 266 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 PAX5Q02548 391 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 ZNF880Q6PDB4 577 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 TMEM185AQ8NFB2 350 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 CCDC107Q8WV48 283 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 DEDD2Q8WXF8 326 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 RAB1CQ92928 201 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 MED30Q96HR3 178 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 MARVELD1Q9BSK0 173 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 TINAGL1Q9GZM7 467 aaPredicted RBP16.56■□□□□ 0.24
CLN3-205ENST00000359984 KIF25Q9UIL4 384 aa16.56■□□□□ 0.24
CLN3-205ENST00000359984 CENPEQ02224 2701 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 TRAV39A0A0B4J263 110 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 FAM240BA0A1B0GVZ2 78 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 H7C1Q1 480 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 ADAM20O43506 726 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 NDUFA2O43678 99 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 RAB3DO95716 219 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 PMP2P02689 132 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 SLC6A1P30531 599 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 HRH1P35367 487 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 EIF2B2P49770 351 aaKnown RBP16.55■□□□□ 0.24
CLN3-205ENST00000359984 EDDM3AQ14507 147 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 SRSF7Q16629 238 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLN3-205ENST00000359984 PLA1AQ53H76 456 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 KRBOX4Q5JUW0 171 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 PLET1Q6UQ28 207 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 SLC36A1Q7Z2H8 476 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 TPRX1Q8N7U7 411 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 OR5D13Q8NGL4 314 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 TIMD4Q96H15 378 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 FAM234AQ9H0X4 552 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 ZNF286AQ9HBT8 521 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 KAAG1Q9UBP8 84 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 SPG11Q96JI7 2443 aa16.55■□□□□ 0.24
CLN3-205ENST00000359984 TRAPPC2P0DI81 140 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 TRAPPC2BP0DI82 140 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 RCC1P18754 421 aaPredicted RBP16.54■□□□□ 0.24
CLN3-205ENST00000359984 Q6ZS49 121 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 C5orf24Q7Z6I8 188 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 FGFRL1Q8N441 504 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 UPRTQ96BW1 309 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 ANXA10Q9UJ72 324 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 TRAPPC2LQ9UL33 140 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 POM121CA8CG34 1229 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 FCN3O75636 299 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 TBPP20226 339 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 FAUP35544 74 aaKnown RBP16.54■□□□□ 0.24
CLN3-205ENST00000359984 RNASE10Q5GAN6 216 aaKnown RBP16.54■□□□□ 0.24
CLN3-205ENST00000359984 ZNF525Q8N782 197 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 OR5AP2Q8NGF4 316 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 OR56B4Q8NH76 319 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 MCUBQ9NWR8 336 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 CTSZQ9UBR2 303 aa16.54■□□□□ 0.24
CLN3-205ENST00000359984 MEIKINA0A087WXM9 373 aa16.53■□□□□ 0.24
CLN3-205ENST00000359984 NAP1L6A6NFF2 107 aa16.53■□□□□ 0.24
CLN3-205ENST00000359984 HMX3A6NHT5 357 aa16.53■□□□□ 0.24
CLN3-205ENST00000359984 CHRFAM7AQ494W8 412 aa16.53■□□□□ 0.24
CLN3-205ENST00000359984 MUC20Q8N307 709 aaPredicted RBP16.53■□□□□ 0.24
CLN3-205ENST00000359984 OR5H2Q8NGV7 314 aa16.53■□□□□ 0.24
CLN3-205ENST00000359984 OR6F1Q8NGZ6 308 aa16.53■□□□□ 0.24
CLN3-205ENST00000359984 MBNL3Q9NUK0 354 aaKnown RBP16.53■□□□□ 0.24
CLN3-205ENST00000359984 CEACAM18A8MTB9 384 aa16.52■□□□□ 0.24
CLN3-205ENST00000359984 ZNF735P0CB33 412 aa16.52■□□□□ 0.24
CLN3-205ENST00000359984 GSTT2P0CG29 244 aa16.52■□□□□ 0.24
CLN3-205ENST00000359984 TAS2R46P59540 309 aa16.52■□□□□ 0.24
CLN3-205ENST00000359984 MEF2DQ14814 521 aa16.52■□□□□ 0.24
CLN3-205ENST00000359984 ACTBL2Q562R1 376 aa16.52■□□□□ 0.24
CLN3-205ENST00000359984 SLC6A7Q99884 636 aa16.52■□□□□ 0.24
CLN3-205ENST00000359984 SLC25A10Q9UBX3 287 aaPredicted RBP16.52■□□□□ 0.24
CLN3-205ENST00000359984 TRDCB7Z8K6 153 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 SCTP09683 121 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 GIFP27352 417 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 ERP29P30040 261 aaKnown RBP16.52■□□□□ 0.23
CLN3-205ENST00000359984 GPR6P46095 362 aaPredicted RBP16.52■□□□□ 0.23
CLN3-205ENST00000359984 OR3A3P47888 321 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 CCR6P51684 374 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 ATP5J2P56134 94 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 P2RX3P56373 397 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 EDDM3BP56851 147 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 ARPC4P59998 168 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 TMEM155Q4W5P6 130 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 MOB1BQ7L9L4 216 aa16.52■□□□□ 0.23
CLN3-205ENST00000359984 DCTN5Q9BTE1 182 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms