RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 SLC25A40Q8TBP6 338 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 ZNF735P0CB33 412 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 MRPL58Q14197 206 aaKnown RBP10.08□□□□□ -0.8
PTPN4-201ENST00000263708 LDLRAD3Q86YD5 345 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 C10orf126Q8N4M7 172 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 ARRDC1Q8N5I2 433 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 TMEM171Q8WVE6 324 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 DUX5Q96PT3 197 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 TRAV1-2A0A0B4J238 106 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 C9orf170A2RU37 121 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 TCF21O43680 179 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 HIST1H1DP16402 221 aaKnown RBP10.08□□□□□ -0.8
PTPN4-201ENST00000263708 MMDQ15546 238 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 CHD5Q8TDI0 1954 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 ZDHHC22Q8N966 263 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 CCL21O00585 134 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 HEXA-AS1Q9H8Q6 139 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 FUT9Q9Y231 359 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 TRAV8-7A0A075B6U6 113 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 PLP1P60201 277 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 ZNF880Q6PDB4 577 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 IFT22Q9H7X7 185 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 HILPDAQ9Y5L2 63 aa10.08□□□□□ -0.8
PTPN4-201ENST00000263708 TDRD15B5MCY1 1934 aaKnown RBP10.07□□□□□ -0.8
PTPN4-201ENST00000263708 CABIN1Q9Y6J0 2220 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 TMEM78Q5T7P6 136 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 OR2W3Q7Z3T1 314 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 DOCK5Q9H7D0 1870 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 TRDCB7Z8K6 153 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 FABP2P12104 132 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 IL11RAQ14626 422 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 MPV17LQ2QL34 196 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 GEMIN7Q9H840 131 aaKnown RBP10.07□□□□□ -0.8
PTPN4-201ENST00000263708 GPR35Q9HC97 309 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 DNAJB12Q9NXW2 375 aaKnown RBP10.07□□□□□ -0.8
PTPN4-201ENST00000263708 TSPO2Q5TGU0 170 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 CITED2Q99967 270 aaPredicted RBP10.07□□□□□ -0.8
PTPN4-201ENST00000263708 GPR27Q9NS67 375 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 LINC01565O15544 149 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 PDE6DO43924 150 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 CD74P04233 296 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 DPTQ07507 201 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 PPP1R1AQ13522 171 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 C3AR1Q16581 482 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 MAVSQ7Z434 540 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 OR2C3Q8N628 320 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 AHCTF1Q8WYP5 2266 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 FFAR1O14842 300 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 MPLP40238 635 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 SLC23A3Q6PIS1 610 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 CCR2P41597 374 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 LPAR3Q9UBY5 353 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 RBFOX2O43251 390 aaKnown RBP eCLIP10.07□□□□□ -0.87e-8■□□□□ 11.2
PTPN4-201ENST00000263708 EPPINO95925 133 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 PSG6Q00889 435 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 GLDNQ6ZMI3 551 aaPredicted RBP10.07□□□□□ -0.8
PTPN4-201ENST00000263708 EID2BQ96D98 161 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 DCTN5Q9BTE1 182 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 CDCA4Q9BXL8 241 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 TMEM38BQ9NVV0 291 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 TMEM255AQ5JRV8 349 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 FAHD1Q6P587 224 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 OR4B1Q8NGF8 309 aa10.07□□□□□ -0.8
PTPN4-201ENST00000263708 AURKAIP1Q9NWT8 199 aaPredicted RBP10.07□□□□□ -0.8
PTPN4-201ENST00000263708 SCN9AQ15858 1988 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 PSMB11A5LHX3 300 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 PCMT1P22061 227 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 JMJD6Q6NYC1 403 aaPredicted RBP10.06□□□□□ -0.8
PTPN4-201ENST00000263708 CLN8Q9UBY8 286 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 TMEM189A5PLL7 270 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 SCMH1Q96GD3 660 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 PITPNC1Q9UKF7 332 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 KRTCAP3Q53RY4 240 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 LDLRAD1Q5T700 205 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 DLEU7Q6UYE1 221 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 SMOC1Q9H4F8 434 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 POMT2Q9UKY4 750 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 RALGAPA1Q6GYQ0 2036 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 SNURFLB1AK76 121 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 LMO7DNF2Z398 122 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 CXorf1O96002 111 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 PATE4P0C8F1 98 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 RAB32Q13637 225 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 OR51B2Q9Y5P1 312 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 WNT9BO14905 357 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 GALNSP34059 522 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 NXPH1P58417 271 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 SKP2Q13309 424 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 FAM74A4Q5TZK3 123 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 MRM1Q6IN84 353 aaKnown RBP10.06□□□□□ -0.8
PTPN4-201ENST00000263708 OR1K1Q8NGR3 316 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 MS4A4AQ96JQ5 239 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 ZNF117Q03924 483 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 IL13RA2Q14627 380 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 ACER2Q5QJU3 275 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 PTOV1Q86YD1 416 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 PRSS50Q9UI38 385 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 HSF4Q9ULV5 492 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 HLA-DRB3P79483 266 aa10.06□□□□□ -0.8
PTPN4-201ENST00000263708 LRRC75BQ2VPJ9 315 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms