RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CARHSP1Q9Y2V2 147 aaKnown RBP12.7□□□□□ -0.38
NUP54-217ENST00000514987 LRP5LA4QPB2 252 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 CDRT15L2A8MXV6 281 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 SYNGR1O43759 233 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 MED6O75586 246 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 ZNF205O95201 554 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 SEC11BP0C7V7 166 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 SELEP16581 610 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 CAV2P51636 162 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 F2RL1P55085 397 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 SWI5Q1ZZU3 235 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 SPIN3Q5JUX0 258 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 PXDC1Q5TGL8 231 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 ZNF880Q6PDB4 577 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 TBC1D26Q86UD7 250 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 COMMD1Q8N668 190 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 SLC35G3Q8N808 338 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 TP53RKQ96S44 253 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 CDH20Q9HBT6 801 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 FREM1Q5H8C1 2179 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 ABCD4O14678 606 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 SCTP09683 121 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 MMP9P14780 707 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 ZNF14P17017 642 aaPredicted RBP12.69□□□□□ -0.38
NUP54-217ENST00000514987 RAB5CP51148 216 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 GABRA6Q16445 453 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 RNFT1Q5M7Z0 435 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 INO80CQ6PI98 192 aaPredicted RBP12.69□□□□□ -0.38
NUP54-217ENST00000514987 MEX3BQ6ZN04 569 aaKnown RBP12.69□□□□□ -0.38
NUP54-217ENST00000514987 MRPL30Q8TCC3 161 aaKnown RBP12.69□□□□□ -0.38
NUP54-217ENST00000514987 SECTM1Q8WVN6 248 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 KIRREL1Q96J84 757 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 GINS3Q9BRX5 216 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 SEC11CQ9BY50 192 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 TREM1Q9NP99 234 aa12.69□□□□□ -0.38
NUP54-217ENST00000514987 AHCTF1Q8WYP5 2266 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 MYO15AQ9UKN7 3530 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 CLEC18AA5D8T8 446 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 NPIPB11E5RHQ5 1161 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 DEGS1O15121 323 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 WNT2P09544 360 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 RAC2P15153 192 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 CA6P23280 308 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 UCP1P25874 307 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 ZNF169Q14929 603 aaPredicted RBP12.68□□□□□ -0.38
NUP54-217ENST00000514987 ATP1A1-AS1Q5TC04 95 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 SHEQ5VZ18 495 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 OR2T2Q6IF00 324 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 BTNL8Q6UX41 500 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 SELENOHQ8IZQ5 122 aaKnown RBP12.68□□□□□ -0.38
NUP54-217ENST00000514987 BATF2Q8N1L9 274 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 BOLLQ8N9W6 283 aaKnown RBP12.68□□□□□ -0.38
NUP54-217ENST00000514987 CLEC18CQ8NCF0 446 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 OR5D13Q8NGL4 314 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 SNIP1Q8TAD8 396 aaKnown RBP12.68□□□□□ -0.38
NUP54-217ENST00000514987 CABLES2Q9BTV7 478 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 HRH4Q9H3N8 390 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 CLCF1Q9UBD9 225 aa12.68□□□□□ -0.38
NUP54-217ENST00000514987 MED13Q9UHV7 2174 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 F8W036 122 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 H0Y980 276 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 DNASE2O00115 360 aaPredicted RBP12.67□□□□□ -0.38
NUP54-217ENST00000514987 GALR2O43603 387 aaPredicted RBP12.67□□□□□ -0.38
NUP54-217ENST00000514987 RCC1P18754 421 aaPredicted RBP12.67□□□□□ -0.38
NUP54-217ENST00000514987 ATF4P18848 351 aaPredicted RBP12.67□□□□□ -0.38
NUP54-217ENST00000514987 TUBG1P23258 451 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 LPAR6P43657 344 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 NKX2-1P43699 371 aaPredicted RBP12.67□□□□□ -0.38
NUP54-217ENST00000514987 PPP1CBP62140 327 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 HLA-DRB3P79483 266 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 TSC22D1Q15714 1073 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 FAM76BQ5HYJ3 339 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 ATRAIDQ6UW56 229 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 IGFL2Q6UWQ7 119 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 GAPTQ8N292 157 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 OR52M1Q8NGK5 317 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 OR10J5Q8NHC4 309 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 BOD1Q96IK1 185 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 HS3ST6Q96QI5 342 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 SLC25A31Q9H0C2 315 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 TUBG2Q9NRH3 451 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 UQCC1Q9NVA1 299 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 DLL3Q9NYJ7 618 aa12.67□□□□□ -0.38
NUP54-217ENST00000514987 RCL1Q9Y2P8 373 aaKnown RBP12.67□□□□□ -0.38
NUP54-217ENST00000514987 STRAPQ9Y3F4 350 aaKnown RBP12.67□□□□□ -0.38
NUP54-217ENST00000514987 TRAV24A0A0B4J272 114 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 TMEM210A6NLX4 147 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 SNAPINO95295 136 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 ACAA1P09110 424 aaPredicted RBP12.66□□□□□ -0.38
NUP54-217ENST00000514987 VDAC1P21796 283 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 HERPUD1Q15011 391 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 ZNF818PQ6ZRF7 136 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 Q6ZT83 130 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 FAM214BQ7L5A3 538 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 FAM219AQ8IW50 185 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 LYPD6BQ8NI32 183 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 LUZP4Q9P127 313 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 IL36RNQ9UBH0 155 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 OR2W1Q9Y3N9 320 aa12.66□□□□□ -0.38
NUP54-217ENST00000514987 ZNF407Q9C0G0 2248 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms