RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MYPOPQ86VE0 399 aaPredicted RBP15.9■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF695Q8IW36 515 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF100Q8IYN0 542 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 ZIC4Q8N9L1 334 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 FGFBP3Q8TAT2 258 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 TMEM54Q969K7 222 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 TGIF2Q9GZN2 237 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 VSIRQ9H7M9 311 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 LYRM2Q9NU23 88 aaPredicted RBP15.9■□□□□ 0.14
CCDC3-201ENST00000378825 IGLV3-32A0A0A0MS00 114 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF587BE7ETH6 402 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 NPIPA2E9PIF3 369 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 NPIPA3F8WFD2 350 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 CHST1O43916 411 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 FUT3P21217 361 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 GLIPR1P48060 266 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 RAB11AP62491 216 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 NKX6-1P78426 367 aaPredicted RBP15.9■□□□□ 0.14
CCDC3-201ENST00000378825 WDR74Q6RFH5 385 aaPredicted RBP15.9■□□□□ 0.14
CCDC3-201ENST00000378825 SELENOHQ8IZQ5 122 aaKnown RBP15.9■□□□□ 0.14
CCDC3-201ENST00000378825 SPACA9Q96E40 222 aaPredicted RBP15.9■□□□□ 0.14
CCDC3-201ENST00000378825 PLEKHF2Q9H8W4 249 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 IL36RNQ9UBH0 155 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 CHCHD2Q9Y6H1 151 aaPredicted RBP15.9■□□□□ 0.14
CCDC3-201ENST00000378825 ADAMTS20P59510 1910 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 ZFP92A6NM28 416 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 NRASP01111 189 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 SCTP09683 121 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 PGA5P0DJD9 388 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 B4GALT1P15291 398 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 CRYGSP22914 178 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 FGF8P55075 233 aaPredicted RBP15.89■□□□□ 0.13
CCDC3-201ENST00000378825 RAET1LQ5VY80 246 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF880Q6PDB4 577 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 CMTM1Q8IZ96 169 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 GAPTQ8N292 157 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 DNASE2BQ8WZ79 361 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 SPTSSAQ969W0 71 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 SPSB1Q96BD6 273 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 SNX22Q96L94 193 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 SIGLEC12Q96PQ1 595 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 SEMA5BQ9P283 1151 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 A0A1W2PQM1 296 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 ZFAND5O76080 213 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF506Q5JVG8 444 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 Q6ZSR3 168 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 PIGCQ92535 297 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 ALKBH3Q96Q83 286 aaPredicted RBP15.89■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF665Q9H7R5 613 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 GFOD1Q9NXC2 390 aa15.89■□□□□ 0.13
CCDC3-201ENST00000378825 A0A0G2JRQ6 117 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 TNFSF11O14788 317 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 VAMP2P63027 116 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 CCL7P80098 99 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF92Q03936 586 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 AKR1C8PQ5T2L2 129 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 SSX7Q7RTT5 188 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 PLPPR1Q8TBJ4 325 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 CPNE4Q96A23 557 aaPredicted RBP15.88■□□□□ 0.13
CCDC3-201ENST00000378825 RSG1Q9BU20 258 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 BCO1Q9HAY6 547 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 IGLV3-12A0A075B6K2 115 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 A0A087WWC5 75 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 MMP9P14780 707 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 TMEM267Q0VDI3 215 aaPredicted RBP15.88■□□□□ 0.13
CCDC3-201ENST00000378825 EIF3IQ13347 325 aaKnown RBP15.88■□□□□ 0.13
CCDC3-201ENST00000378825 HNF4GQ14541 408 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 FAM180AQ6UWF9 173 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 THNSL2Q86YJ6 484 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 SPEM1Q8N4L4 309 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 FADS6Q8N9I5 356 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 PCED1AQ9H1Q7 454 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 OPA3Q9H6K4 179 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 FREM1Q5H8C1 2179 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 OR5H1A6NKK0 313 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 SYNGR3O43761 229 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 PDCD6O75340 191 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 CD55P08174 381 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 SELLP14151 372 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 NDUFB7P17568 137 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 PAX9P55771 341 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 FAM90A2PQ658T7 463 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 CARFQ8N187 725 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 CCDC71LQ8N9Z2 235 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 OR5L2Q8NGL0 311 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 FAM210BQ96KR6 192 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 SRXN1Q9BYN0 137 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 DEFB126Q9BYW3 111 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 CRLF2Q9HC73 371 aa15.88■□□□□ 0.13
CCDC3-201ENST00000378825 CDS2O95674 445 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 HSPB1P04792 205 aaKnown RBP15.87■□□□□ 0.13
CCDC3-201ENST00000378825 ZNF32P17041 273 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 TCN2P20062 427 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 HLA-DRB3P79483 266 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 MALLQ13021 153 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 HERPUD1Q15011 391 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 LCN15Q6UWW0 184 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 SLC25A26Q70HW3 274 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 CRIM1Q9NZV1 1036 aa15.87■□□□□ 0.13
CCDC3-201ENST00000378825 FAM186AA6NE01 2351 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms