RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C ALD6P54115 500 aaKnown RBP5.71□□□□□ -1.5
VPS1YKR001C MGR3Q04472 501 aa5.71□□□□□ -1.5
VPS1YKR001C EIS1Q05050 843 aaKnown RBP5.71□□□□□ -1.5
VPS1YKR001C TSR2Q06672 205 aaKnown RBP5.71□□□□□ -1.5
VPS1YKR001C NOP12Q08208 459 aaKnown RBP5.71□□□□□ -1.5
VPS1YKR001C YPL260WQ08977 551 aa5.71□□□□□ -1.5
VPS1YKR001C HOP09932 586 aa5.7□□□□□ -1.5
VPS1YKR001C HOM2P13663 365 aaKnown RBP5.7□□□□□ -1.5
VPS1YKR001C RSR1P13856 272 aa5.7□□□□□ -1.5
VPS1YKR001C GFD2P25370 566 aaKnown RBP5.7□□□□□ -1.5
VPS1YKR001C MRC1P25588 1096 aa5.7□□□□□ -1.5
VPS1YKR001C RDS1P25611 832 aa5.7□□□□□ -1.5
VPS1YKR001C NAM7P30771 971 aaKnown RBP5.7□□□□□ -1.5
VPS1YKR001C SEC21P32074 935 aaKnown RBP5.7□□□□□ -1.5
VPS1YKR001C UTR4P32626 227 aa5.7□□□□□ -1.5
VPS1YKR001C PPQ1P32945 549 aa5.7□□□□□ -1.5
VPS1YKR001C CEP3P40969 608 aa5.7□□□□□ -1.5
VPS1YKR001C SKP2P42843 763 aa5.7□□□□□ -1.5
VPS1YKR001C EPL1P43572 832 aa5.7□□□□□ -1.5
VPS1YKR001C YNR014WP53719 212 aa5.7□□□□□ -1.5
VPS1YKR001C BSC5P53755 489 aa5.7□□□□□ -1.5
VPS1YKR001C YPL109CQ02981 657 aa5.7□□□□□ -1.5
VPS1YKR001C REX3Q12090 404 aa5.7□□□□□ -1.5
VPS1YKR001C YDR524C-BQ3E6R4 66 aa5.7□□□□□ -1.5
VPS1YKR001C PGK1P00560 416 aaKnown RBP5.69□□□□□ -1.5
VPS1YKR001C RPP0P05317 312 aaKnown RBP5.69□□□□□ -1.5
VPS1YKR001C IRE1P32361 1115 aa5.69□□□□□ -1.5
VPS1YKR001C PEP7P32609 515 aa5.69□□□□□ -1.5
VPS1YKR001C YHR219WP38900 624 aa5.69□□□□□ -1.5
VPS1YKR001C NOP16P40007 231 aaKnown RBP5.69□□□□□ -1.5
VPS1YKR001C NEO1P40527 1151 aa5.69□□□□□ -1.5
VPS1YKR001C INA22P40576 216 aa5.69□□□□□ -1.5
VPS1YKR001C ABM1P47146 123 aa5.69□□□□□ -1.5
VPS1YKR001C ZIP2P53061 704 aa5.69□□□□□ -1.5
VPS1YKR001C SOL4P53315 255 aa5.69□□□□□ -1.5
VPS1YKR001C INA17Q02888 182 aa5.69□□□□□ -1.5
VPS1YKR001C NSE5Q03718 556 aa5.69□□□□□ -1.5
VPS1YKR001C RVB1Q03940 463 aaKnown RBP5.69□□□□□ -1.5
VPS1YKR001C IVY1Q04934 453 aa5.69□□□□□ -1.5
VPS1YKR001C ARP9Q05123 467 aa5.69□□□□□ -1.5
VPS1YKR001C SKG3Q06315 1026 aa5.69□□□□□ -1.5
VPS1YKR001C ADY3Q07732 790 aa5.69□□□□□ -1.5
VPS1YKR001C PUF3Q07807 879 aaKnown RBP RIP-Chip data5.69□□□□□ -1.5not detected
VPS1YKR001C MYO1P08964 1928 aa5.69□□□□□ -1.5
VPS1YKR001C PDC1P06169 563 aaKnown RBP5.69□□□□□ -1.5
VPS1YKR001C CDC16P09798 840 aa5.69□□□□□ -1.5
VPS1YKR001C PRP6P19735 899 aaPredicted RBP5.69□□□□□ -1.5
VPS1YKR001C NIP1P32497 812 aaKnown RBP5.69□□□□□ -1.5
VPS1YKR001C YPT52P36018 234 aaKnown RBP5.69□□□□□ -1.5
VPS1YKR001C NUP60P39705 539 aa5.69□□□□□ -1.5
VPS1YKR001C YER137CP40083 148 aaKnown RBP5.69□□□□□ -1.5
VPS1YKR001C HUL4P40985 892 aa5.69□□□□□ -1.5
VPS1YKR001C RSM7P47150 247 aa5.69□□□□□ -1.5
VPS1YKR001C TOM22P49334 152 aa5.69□□□□□ -1.5
VPS1YKR001C RMD1Q03441 430 aa5.69□□□□□ -1.5
VPS1YKR001C ALG1P16661 449 aa5.68□□□□□ -1.5
VPS1YKR001C MCM2P29469 868 aa5.68□□□□□ -1.5
VPS1YKR001C GCD7P32502 381 aaPredicted RBP5.68□□□□□ -1.5
VPS1YKR001C SMF2P38778 549 aa5.68□□□□□ -1.5
VPS1YKR001C VAC8P39968 578 aa5.68□□□□□ -1.5
VPS1YKR001C GYP8P43570 497 aa5.68□□□□□ -1.5
VPS1YKR001C ROG3P43602 733 aa5.68□□□□□ -1.5
VPS1YKR001C HAM1P47119 197 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C STB4P50104 949 aa5.68□□□□□ -1.5
VPS1YKR001C TAF12Q03761 539 aa5.68□□□□□ -1.5
VPS1YKR001C YDR131CQ03899 556 aa5.68□□□□□ -1.5
VPS1YKR001C SPC2Q04969 178 aa5.68□□□□□ -1.5
VPS1YKR001C EAF1Q06337 982 aa5.68□□□□□ -1.5
VPS1YKR001C MSC6Q08818 692 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C CDC53Q12018 815 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C APC11Q12157 165 aa5.68□□□□□ -1.5
VPS1YKR001C ARD1P07347 238 aaPredicted RBP5.68□□□□□ -1.5
VPS1YKR001C RAD18P10862 487 aa5.68□□□□□ -1.5
VPS1YKR001C PUT4P15380 627 aa5.68□□□□□ -1.5
VPS1YKR001C NCP1P16603 691 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C SPB1P25582 841 aaPredicted RBP5.68□□□□□ -1.5
VPS1YKR001C ITR2P30606 609 aa5.68□□□□□ -1.5
VPS1YKR001C SSH4P32343 579 aa5.68□□□□□ -1.5
VPS1YKR001C FBP26P32604 452 aa5.68□□□□□ -1.5
VPS1YKR001C YGL015CP33199 130 aa5.68□□□□□ -1.5
VPS1YKR001C MNN2P38069 597 aa5.68□□□□□ -1.5
VPS1YKR001C YEL023CP39992 682 aa5.68□□□□□ -1.5
VPS1YKR001C PSY2P40164 858 aa5.68□□□□□ -1.5
VPS1YKR001C JEM1P40358 645 aa5.68□□□□□ -1.5
VPS1YKR001C PCI8P40512 444 aa5.68□□□□□ -1.5
VPS1YKR001C PKP1P40530 394 aa5.68□□□□□ -1.5
VPS1YKR001C ULP2P40537 1034 aaPredicted RBP5.68□□□□□ -1.5
VPS1YKR001C VMA10P48836 114 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C MCM6P53091 1017 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C KXD1P53158 218 aa5.68□□□□□ -1.5
VPS1YKR001C SIW14P53965 281 aa5.68□□□□□ -1.5
VPS1YKR001C ABZ2Q03266 374 aa5.68□□□□□ -1.5
VPS1YKR001C LCB5Q06147 687 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C PHO92Q06390 306 aa5.68□□□□□ -1.5
VPS1YKR001C NOP6Q07623 225 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C CMS1Q07897 291 aaKnown RBP5.68□□□□□ -1.5
VPS1YKR001C NCB2Q92317 146 aa5.68□□□□□ -1.5
VPS1YKR001C MSH2P25847 964 aa5.67□□□□□ -1.5
VPS1YKR001C MRP4P32902 394 aa5.67□□□□□ -1.5
VPS1YKR001C CPR5P35176 225 aa5.67□□□□□ -1.5
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms