RNA–Protein interactions for RNA: YDL006W

PTC1, Transcript of Type 2C protein phosphatase (PP2C), yeast

Gene PTC1, Length 846 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTC1	YDL006W	BEM4	P39011	633 aa		5.56	□□□□□ -1.52
PTC1	YDL006W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.56	□□□□□ -1.52	not detected
PTC1	YDL006W	SET2	P46995	733 aa	Known RBP	5.56	□□□□□ -1.52
PTC1	YDL006W	BRE5	P53741	515 aa	Known RBP	5.56	□□□□□ -1.52
PTC1	YDL006W	PTA1	Q01329	785 aa	Predicted RBP	5.56	□□□□□ -1.52
PTC1	YDL006W	HFI1	Q12060	488 aa		5.56	□□□□□ -1.52
PTC1	YDL006W	LAS17	Q12446	633 aa		5.56	□□□□□ -1.52
PTC1	YDL006W	ATG11	Q12527	1178 aa		5.56	□□□□□ -1.52
PTC1	YDL006W	CFT1	Q06632	1357 aa	Known RBP	5.55	□□□□□ -1.52
PTC1	YDL006W	TY1B-NL2	Q99337	1749 aa	Known RBP	5.55	□□□□□ -1.52
PTC1	YDL006W	AEP2	P22136	580 aa		5.55	□□□□□ -1.52
PTC1	YDL006W	OAF3	P36023	863 aa		5.55	□□□□□ -1.52
PTC1	YDL006W	HXT6	P39003	570 aa	Known RBP	5.55	□□□□□ -1.52
PTC1	YDL006W	HXT7	P39004	570 aa		5.55	□□□□□ -1.52
PTC1	YDL006W	IRC24	P40580	263 aa		5.55	□□□□□ -1.52
PTC1	YDL006W	FOL1	P53848	824 aa		5.55	□□□□□ -1.52
PTC1	YDL006W	COG6	P53959	839 aa		5.55	□□□□□ -1.52
PTC1	YDL006W	REC102	Q02721	264 aa		5.55	□□□□□ -1.52
PTC1	YDL006W	HMO1	Q03973	246 aa	Known RBP	5.55	□□□□□ -1.52
PTC1	YDL006W	TY3B-I	Q7LHG5	1498 aa	Known RBP	5.55	□□□□□ -1.52
PTC1	YDL006W	SWI6	P09959	803 aa		5.54	□□□□□ -1.52
PTC1	YDL006W	ADE2	P21264	571 aa	Known RBP	5.54	□□□□□ -1.52
PTC1	YDL006W	CTS1	P29029	562 aa		5.54	□□□□□ -1.52
PTC1	YDL006W	AKL1	P38080	1108 aa	Known RBP	5.54	□□□□□ -1.52
PTC1	YDL006W	GPP2	P40106	250 aa	Known RBP	5.54	□□□□□ -1.52
PTC1	YDL006W	NIT2	P47016	307 aa		5.54	□□□□□ -1.52
PTC1	YDL006W	YJR120W	P47157	116 aa		5.54	□□□□□ -1.52
PTC1	YDL006W	RMP1	Q12530	201 aa		5.54	□□□□□ -1.52
PTC1	YDL006W	ENP1	P38333	483 aa	Known RBP	5.53	□□□□□ -1.52
PTC1	YDL006W	NUG1	P40010	520 aa	Known RBP	5.53	□□□□□ -1.52
PTC1	YDL006W	AMA1	P50082	593 aa		5.53	□□□□□ -1.52
PTC1	YDL006W	GAD1	Q04792	585 aa		5.53	□□□□□ -1.52
PTC1	YDL006W	TGL5	Q12043	749 aa		5.53	□□□□□ -1.52
PTC1	YDL006W	YLR419W	Q06698	1435 aa	Known RBP	5.53	□□□□□ -1.52
PTC1	YDL006W	USO1	P25386	1790 aa		5.52	□□□□□ -1.53
PTC1	YDL006W	MET3	P08536	511 aa		5.52	□□□□□ -1.53
PTC1	YDL006W	PYC1	P11154	1178 aa	Known RBP	5.52	□□□□□ -1.53
PTC1	YDL006W	HCM1	P25364	564 aa		5.52	□□□□□ -1.53
PTC1	YDL006W	TRZ1	P36159	838 aa	Predicted RBP	5.52	□□□□□ -1.53
PTC1	YDL006W	BUL1	P48524	976 aa		5.52	□□□□□ -1.53
PTC1	YDL006W	MRPS35	P53292	345 aa		5.52	□□□□□ -1.53
PTC1	YDL006W	LEE1	Q02799	301 aa	Known RBP	5.52	□□□□□ -1.53
PTC1	YDL006W	YHM2	Q04013	314 aa		5.52	□□□□□ -1.53
PTC1	YDL006W	DLT1	Q04216	342 aa		5.52	□□□□□ -1.53
PTC1	YDL006W	RPS21B	Q3E754	87 aa	Known RBP	5.52	□□□□□ -1.53
PTC1	YDL006W	MHP1	P43638	1398 aa		5.52	□□□□□ -1.53
PTC1	YDL006W	LAT1	P12695	482 aa	Known RBP	5.51	□□□□□ -1.53
PTC1	YDL006W	SEC65	P29478	273 aa		5.51	□□□□□ -1.53
PTC1	YDL006W	YHR112C	P38716	378 aa		5.51	□□□□□ -1.53
PTC1	YDL006W	YHR202W	P38887	602 aa		5.51	□□□□□ -1.53
PTC1	YDL006W	EMP65	P40085	556 aa		5.51	□□□□□ -1.53
PTC1	YDL006W	YIR042C	P40586	236 aa		5.51	□□□□□ -1.53
PTC1	YDL006W	NOP2	P40991	618 aa	Known RBP	5.51	□□□□□ -1.53
PTC1	YDL006W	PEX14	P53112	341 aa		5.51	□□□□□ -1.53
PTC1	YDL006W	TEX1	P53851	422 aa	Known RBP	5.51	□□□□□ -1.53
PTC1	YDL006W	SKY1	Q03656	742 aa		5.51	□□□□□ -1.53
PTC1	YDL006W	NTO1	Q12311	748 aa		5.51	□□□□□ -1.53
PTC1	YDL006W	PMI40	P29952	429 aa	Known RBP	5.5	□□□□□ -1.53
PTC1	YDL006W	PET127	P32606	800 aa		5.5	□□□□□ -1.53
PTC1	YDL006W	KTR4	P38131	464 aa		5.5	□□□□□ -1.53
PTC1	YDL006W	FKH2	P41813	862 aa		5.5	□□□□□ -1.53
PTC1	YDL006W	YMR210W	Q03649	449 aa		5.5	□□□□□ -1.53
PTC1	YDL006W	YLR407W	Q06070	228 aa		5.5	□□□□□ -1.53
PTC1	YDL006W	ESC8	Q08119	714 aa		5.5	□□□□□ -1.53
PTC1	YDL006W	RPS21A	P0C0V8	87 aa	Known RBP	5.49	□□□□□ -1.53
PTC1	YDL006W	CAF20	P12962	161 aa	Known RBP	5.49	□□□□□ -1.53
PTC1	YDL006W	IMG2	P25642	146 aa	Predicted RBP	5.49	□□□□□ -1.53
PTC1	YDL006W	EFT1	P32324	842 aa	Known RBP	5.49	□□□□□ -1.53
PTC1	YDL006W	YKU70	P32807	602 aa		5.49	□□□□□ -1.53
PTC1	YDL006W	DEF1	P35732	738 aa	Known RBP	5.49	□□□□□ -1.53
PTC1	YDL006W	SHM2	P37291	469 aa	Known RBP	5.49	□□□□□ -1.53
PTC1	YDL006W	GRX7	P38068	203 aa		5.49	□□□□□ -1.53
PTC1	YDL006W	ELO3	P40319	345 aa		5.49	□□□□□ -1.53
PTC1	YDL006W	BAP3	P41815	604 aa		5.49	□□□□□ -1.53
PTC1	YDL006W	RNR4	P49723	345 aa	Known RBP	5.49	□□□□□ -1.53
PTC1	YDL006W	NOP15	P53927	220 aa	Predicted RBP	5.49	□□□□□ -1.53
PTC1	YDL006W	PDS5	Q04264	1277 aa		5.49	□□□□□ -1.53
PTC1	YDL006W	YPR027C	Q12079	277 aa		5.49	□□□□□ -1.53
PTC1	YDL006W	RPS17A	P02407	136 aa	Known RBP	5.48	□□□□□ -1.53
PTC1	YDL006W	RPS17B	P14127	136 aa	Known RBP	5.48	□□□□□ -1.53
PTC1	YDL006W	PLC1	P32383	869 aa		5.48	□□□□□ -1.53
PTC1	YDL006W	YBR053C	P38235	358 aa		5.48	□□□□□ -1.53
PTC1	YDL006W	BIT2	P38346	545 aa		5.48	□□□□□ -1.53
PTC1	YDL006W	IES1	P43579	692 aa		5.48	□□□□□ -1.53
PTC1	YDL006W	ENP2	P48234	707 aa	Known RBP	5.48	□□□□□ -1.53
PTC1	YDL006W	PEX8	P53248	589 aa		5.48	□□□□□ -1.53
PTC1	YDL006W	CTK1	Q03957	528 aa	Known RBP	5.48	□□□□□ -1.53
PTC1	YDL006W	AIM39	Q08223	395 aa		5.48	□□□□□ -1.53
PTC1	YDL006W	TMA7	Q3E764	64 aa	Known RBP	5.48	□□□□□ -1.53
PTC1	YDL006W	SEC3	P33332	1336 aa	Known RBP	5.48	□□□□□ -1.53
PTC1	YDL006W	RNR1	P21524	888 aa	Known RBP	5.47	□□□□□ -1.53
PTC1	YDL006W	ERG4	P25340	473 aa		5.47	□□□□□ -1.53
PTC1	YDL006W	HRR25	P29295	494 aa	Known RBP	5.47	□□□□□ -1.53
PTC1	YDL006W	MUP1	P50276	574 aa		5.47	□□□□□ -1.53
PTC1	YDL006W	PHO23	P50947	330 aa		5.47	□□□□□ -1.53
PTC1	YDL006W	SLD3	P53135	668 aa		5.47	□□□□□ -1.53
PTC1	YDL006W	ISA1	Q07821	250 aa	Predicted RBP	5.47	□□□□□ -1.53
PTC1	YDL006W	VHS3	Q08438	674 aa		5.47	□□□□□ -1.53
PTC1	YDL006W	SGO1	Q08490	590 aa		5.47	□□□□□ -1.53
PTC1	YDL006W	HRP1	Q99383	534 aa	Known RBP	5.47	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 22.5 ms