RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 STRIP1Q5VSL9 837 aa18.45■□□□□ 0.54
TRIM28-207ENST00000597136 RSBN1LQ6PCB5 846 aaPredicted RBP18.45■□□□□ 0.54
TRIM28-207ENST00000597136 RHPN1Q8TCX5 695 aa18.45■□□□□ 0.54
TRIM28-207ENST00000597136 EAF2Q96CJ1 260 aaPredicted RBP18.45■□□□□ 0.54
TRIM28-207ENST00000597136 GMLQ99445 158 aa18.45■□□□□ 0.54
TRIM28-207ENST00000597136 BCL11AQ9H165 835 aa18.45■□□□□ 0.54
TRIM28-207ENST00000597136 GPRC5DQ9NZD1 345 aa18.45■□□□□ 0.54
TRIM28-207ENST00000597136 CNOT7Q9UIV1 285 aaKnown RBP18.45■□□□□ 0.54
TRIM28-207ENST00000597136 POTEIP0CG38 1075 aa18.44■□□□□ 0.54
TRIM28-207ENST00000597136 POTEJP0CG39 1038 aa18.44■□□□□ 0.54
TRIM28-207ENST00000597136 HSP90AB4PQ58FF6 505 aa18.44■□□□□ 0.54
TRIM28-207ENST00000597136 CERS5Q8N5B7 392 aa18.44■□□□□ 0.54
TRIM28-207ENST00000597136 CCDC8Q9H0W5 538 aaPredicted RBP18.44■□□□□ 0.54
TRIM28-207ENST00000597136 TAF1DQ9H5J8 278 aaPredicted RBP18.44■□□□□ 0.54
TRIM28-207ENST00000597136 ECM29Q5VYK3 1845 aa18.44■□□□□ 0.54
TRIM28-207ENST00000597136 CCDC102BQ68D86 513 aa18.43■□□□□ 0.54
TRIM28-207ENST00000597136 DBNDD2Q9BQY9 259 aa18.43■□□□□ 0.54
TRIM28-207ENST00000597136 GPR108Q9NPR9 543 aa18.43■□□□□ 0.54
TRIM28-207ENST00000597136 HACL1Q9UJ83 578 aa18.43■□□□□ 0.54
TRIM28-207ENST00000597136 RAB11FIP3O75154 756 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 EPHX2P34913 555 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 CHAF1AQ13111 956 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-207ENST00000597136 DPF2Q92785 391 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 TLR7Q9NYK1 1049 aaKnown RBP18.42■□□□□ 0.54
TRIM28-207ENST00000597136 FAM205AQ6ZU69 1335 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 COL1A1P02452 1464 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-207ENST00000597136 SMARCA5O60264 1052 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-207ENST00000597136 FRAT2O75474 233 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-207ENST00000597136 EGFRP00533 1210 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 NUCB1Q02818 461 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 GRIK5Q16478 980 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 ERC1Q8IUD2 1116 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 MICALL2Q8IY33 904 aa18.42■□□□□ 0.54
TRIM28-207ENST00000597136 IQCA1LA6NCM1 817 aa18.41■□□□□ 0.54
TRIM28-207ENST00000597136 LMOD1P29536 600 aaPredicted RBP18.41■□□□□ 0.54
TRIM28-207ENST00000597136 ANKRD45Q5TZF3 282 aa18.41■□□□□ 0.54
TRIM28-207ENST00000597136 SAMD7Q7Z3H4 446 aa18.41■□□□□ 0.54
TRIM28-207ENST00000597136 AGBL3Q8NEM8 1001 aa18.41■□□□□ 0.54
TRIM28-207ENST00000597136 KIF1BPQ96EK5 621 aa18.41■□□□□ 0.54
TRIM28-207ENST00000597136 DBNLQ9UJU6 430 aaKnown RBP18.41■□□□□ 0.54
TRIM28-207ENST00000597136 RPS12P25398 132 aaKnown RBP18.4■□□□□ 0.54
TRIM28-207ENST00000597136 HIRAP54198 1017 aaPredicted RBP18.4■□□□□ 0.54
TRIM28-207ENST00000597136 GORABQ5T7V8 394 aa18.4■□□□□ 0.54
TRIM28-207ENST00000597136 KIAA0825Q8IV33 1275 aa18.4■□□□□ 0.54
TRIM28-207ENST00000597136 EAPPQ56P03 285 aaPredicted RBP18.39■□□□□ 0.53
TRIM28-207ENST00000597136 RBM26Q5T8P6 1007 aaKnown RBP18.39■□□□□ 0.53
TRIM28-207ENST00000597136 AACSQ86V21 672 aa18.39■□□□□ 0.53
TRIM28-207ENST00000597136 TRPM4Q8TD43 1214 aa18.39■□□□□ 0.53
TRIM28-207ENST00000597136 LRRCC1Q9C099 1032 aa18.39■□□□□ 0.53
TRIM28-207ENST00000597136 F8W031 263 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-207ENST00000597136 H7C1D1 291 aa18.38■□□□□ 0.53
TRIM28-207ENST00000597136 RASGRF1Q13972 1273 aa18.38■□□□□ 0.53
TRIM28-207ENST00000597136 SCARF1Q14162 830 aa18.38■□□□□ 0.53
TRIM28-207ENST00000597136 TBC1D10BQ4KMP7 808 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-207ENST00000597136 MFSD14BQ5SR56 506 aa18.38■□□□□ 0.53
TRIM28-207ENST00000597136 CHD1LQ86WJ1 897 aa18.38■□□□□ 0.53
TRIM28-207ENST00000597136 USP17L8P0C7I0 530 aa18.38■□□□□ 0.53
TRIM28-207ENST00000597136 PI16Q6UXB8 463 aa18.38■□□□□ 0.53
TRIM28-207ENST00000597136 C16orf71Q8IYS4 520 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-207ENST00000597136 ADARB2Q9NS39 739 aaKnown RBP18.38■□□□□ 0.53
TRIM28-207ENST00000597136 GNL3LQ9NVN8 582 aaKnown RBP18.38■□□□□ 0.53
TRIM28-207ENST00000597136 TRPM7Q96QT4 1865 aa18.37■□□□□ 0.53
TRIM28-207ENST00000597136 MYH7P12883 1935 aa18.37■□□□□ 0.53
TRIM28-207ENST00000597136 CLASRPQ8N2M8 674 aaKnown RBP18.37■□□□□ 0.53
TRIM28-207ENST00000597136 PCDHAC2Q9Y5I4 1007 aa18.37■□□□□ 0.53
TRIM28-207ENST00000597136 MYO3BQ8WXR4 1341 aa18.36■□□□□ 0.53
TRIM28-207ENST00000597136 TOMM70O94826 608 aa18.36■□□□□ 0.53
TRIM28-207ENST00000597136 MCAMP43121 646 aa18.36■□□□□ 0.53
TRIM28-207ENST00000597136 ZNF280AP59817 542 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-207ENST00000597136 FKBP1AP62942 108 aaKnown RBP18.36■□□□□ 0.53
TRIM28-207ENST00000597136 LNPKQ9C0E8 428 aa18.36■□□□□ 0.53
TRIM28-207ENST00000597136 SNRKQ9NRH2 765 aa18.36■□□□□ 0.53
TRIM28-207ENST00000597136 HMG20BQ9P0W2 317 aa18.36■□□□□ 0.53
TRIM28-207ENST00000597136 ZBTB47Q9UFB7 747 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-207ENST00000597136 AK9Q5TCS8 1911 aa18.36■□□□□ 0.53
TRIM28-207ENST00000597136 DOCK2Q92608 1830 aa18.35■□□□□ 0.53
TRIM28-207ENST00000597136 ARID4AP29374 1257 aaPredicted RBP18.35■□□□□ 0.53
TRIM28-207ENST00000597136 DENND2AQ9ULE3 1009 aa18.35■□□□□ 0.53
TRIM28-207ENST00000597136 CLEC11AQ9Y240 323 aa18.35■□□□□ 0.53
TRIM28-207ENST00000597136 ASTN2O75129 1339 aaPredicted RBP18.34■□□□□ 0.53
TRIM28-207ENST00000597136 CCDC158Q5M9N0 1113 aa18.34■□□□□ 0.53
TRIM28-207ENST00000597136 TTC39AQ5SRH9 613 aa18.34■□□□□ 0.53
TRIM28-207ENST00000597136 USP50Q70EL3 339 aaPredicted RBP18.34■□□□□ 0.53
TRIM28-207ENST00000597136 PNMA8AQ86V59 439 aaPredicted RBP18.34■□□□□ 0.53
TRIM28-207ENST00000597136 MYOZ2Q9NPC6 264 aa18.34■□□□□ 0.53
TRIM28-207ENST00000597136 SEMA3EO15041 775 aa18.34■□□□□ 0.53
TRIM28-207ENST00000597136 TBC1D9Q6ZT07 1266 aa18.34■□□□□ 0.53
TRIM28-207ENST00000597136 SKAP1Q86WV1 359 aa18.34■□□□□ 0.53
TRIM28-207ENST00000597136 WDR66Q8TBY9 1149 aa18.34■□□□□ 0.53
TRIM28-207ENST00000597136 TTF2Q9UNY4 1162 aaKnown RBP18.34■□□□□ 0.53
TRIM28-207ENST00000597136 NDUFB9Q9Y6M9 179 aa18.34■□□□□ 0.53
TRIM28-207ENST00000597136 CDK5RAP2Q96SN8 1893 aa18.33■□□□□ 0.53
TRIM28-207ENST00000597136 ZBTB22O15209 634 aa18.33■□□□□ 0.52
TRIM28-207ENST00000597136 IFIT2P09913 472 aaKnown RBP18.33■□□□□ 0.52
TRIM28-207ENST00000597136 UQCRFS1P1P0C7P4 283 aa18.33■□□□□ 0.52
TRIM28-207ENST00000597136 KIF4BQ2VIQ3 1234 aa18.33■□□□□ 0.52
TRIM28-207ENST00000597136 NBPF9Q3BBW0 867 aa18.33■□□□□ 0.52
TRIM28-207ENST00000597136 OGFOD1Q8N543 542 aa18.33■□□□□ 0.52
TRIM28-207ENST00000597136 SPATA5Q8NB90 893 aa18.33■□□□□ 0.52
TRIM28-207ENST00000597136 TBC1D22AQ8WUA7 517 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms